PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g016890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 517aa    MW: 56489.1 Da    PI: 7.1331
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g016890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-11170193326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C ++++t tCk+Gd+CkF H+
  Csa19g016890.1 170 EKDCTHYMQTRTCKFGDSCKFDHP 193
                     678********************8 PP
2zf-CCCH28.62.5e-09219245127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++ +t  Cky +rCkF+H++
  Csa19g016890.1 219 PGEPDCPYYIKTQRCKYASRCKFNHPR 245
                     5789*********************96 PP
3zf-CCCH375.5e-12264288327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C f+++tG Ck+G +CkF+H++
  Csa19g016890.1 264 EPMCTFYMKTGKCKFGLTCKFHHPK 288
                     689********************96 PP
4zf-CCCH38.22.5e-12334360127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+f+++tG CkyG++C+++H++
  Csa19g016890.1 334 PGEADCPFYLKTGSCKYGATCRYNHPE 360
                     57899********************96 PP
5zf-CCCH35.91.3e-11415439226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+++++tG+C +G+rC+F+H+
  Csa19g016890.1 415 GQSECDYYMKTGECEFGERCRFHHP 439
                     7899********************8 PP
6zf-CCCH41.42.3e-13471493527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tGtCkyG++CkF H+p
  Csa19g016890.1 471 NCPYYMKTGTCKYGATCKFDHPP 493
                     6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.432167195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5169194IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041169194IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9170193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4173192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.357218246IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014218245IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5220245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5223248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4224247IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3261289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6264289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5266287IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-9267288IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7333360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554333361IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10335360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5337361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5339360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521413441IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5413440IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6414443IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9415439IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5419440IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6466493IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389466494IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-11471493IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5471493IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5472491IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
YALHQPSHAA ASASAVSPAL PPQPPITALS SLYGSSSADH YYPDSTFRFL ARDGSEALSN  60
YNSGTLASSS AMYHHLPNTT ASHLAYPQLL QHQEPSSWPP GVEVPGAASA VEPLPPGVKR  120
TSEALYYPTL LGAHNTIGQT EAWYTTDYFT KRPKLESTSH LPVYPQRAGE KDCTHYMQTR  180
TCKFGDSCKF DHPIWVPEGG IPDWKEAPVV PNEEYPERPG EPDCPYYIKT QRCKYASRCK  240
FNHPRAEAAV SVENQEVLPE RPSEPMCTFY MKTGKCKFGL TCKFHHPKDI QLPSSSQDNG  300
SSEVLTSDPD ATNNPHVTFT PALYHNSKGL PVRPGEADCP FYLKTGSCKY GATCRYNHPE  360
RTAFIPQAAG INYSLLSSNA ANLNLGMVTP ATSLYQNLSQ PTLGAPSATY PQRPGQSECD  420
YYMKTGECEF GERCRFHHPA DRLSATTKQA SQPPNVKLSL AGYPRREGAL NCPYYMKTGT  480
CKYGATCKFD HPPPGEVMAK TTSEADAAGA TTDTTQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g016890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291450.0AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16.
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499333.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7L0J20.0D7L0J2_ARALL; Enhancer of ag-4 1
STRINGXP_010489794.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)