PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g015000.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 442aa MW: 49891.4 Da PI: 4.7358

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g015000.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.6e-18	77	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r r +lg+f taeeAa a+++a++ ++g Csa19g015000.1 77 CSFRGVRQRI-WGKWVAEIREP---N-RgNRLWLGTFPTAEEAASAYDEAARVMYG 127 579**998.******8...2.359*******************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.6E-12	77	127	IPR001471	AP2/ERF domain
CDD	cd00018	7.42E-31	77	136	No hit	No description
PROSITE profile	PS51032	21.97	78	135	IPR001471	AP2/ERF domain
SMART	SM00380	4.1E-38	78	141	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.7E-31	78	136	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-20	79	135	IPR016177	DNA-binding domain
PRINTS	PR00367	2.2E-9	79	90	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-9	101	117	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MAIYDQTGTS STQKKRKSRA RADGLTVADR LKKWKEYNET VEASIIILGE KPRRKVPAKG 60 SKKGCMKGKG GPENPHCSFR GVRQRIWGKW VAEIREPNRG NRLWLGTFPT AEEAASAYDE 120 AARVMYGSLA RLNFPECVGS EFTSTSSQSE VCTFENKAVL CGDICVKQED TDCESKQYSQ 180 ILDFREESGE TRMDNCAVRH QNVDNVLNYD LLKEFEQQYW GEAMKEEERP KQEEEEIPKQ 240 EEEEMQKRLQ LQLQQQQEQE QEQQPTAYCW RLWTSAFQVP SFRQDSGGFR NASKEGGDVI 300 GTSTTANNRI GSSISKEDPA EDTYSVIDWD AASSFQVHLD GLNKILEDPK DKDGLQSFVS 360 NMGAASSSMV PYSWEYEKIS WDFEERSIAK SACGSSYVSA TTGDVVDDIG HMDHFKMETG 420 SPTFVDILKN SFAYDPLLKL L*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MAIYDQTGTS STQKKRKSRA RADGLTVADR LKKWKEYNET VEASIIILGE KPRRKVPAKG  60
SKKGCMKGKG GPENPHCSFR GVRQRIWGKW VAEIREPNRG NRLWLGTFPT AEEAASAYDE  120
AARVMYGSLA RLNFPECVGS EFTSTSSQSE VCTFENKAVL CGDICVKQED TDCESKQYSQ  180
ILDFREESGE TRMDNCAVRH QNVDNVLNYD LLKEFEQQYW GEAMKEEERP KQEEEEIPKQ  240
EEEEMQKRLQ LQLQQQQEQE QEQQPTAYCW RLWTSAFQVP SFRQDSGGFR NASKEGGDVI  300
GTSTTANNRI GSSISKEDPA EDTYSVIDWD AASSFQVHLD GLNKILEDPK DKDGLQSFVS  360
NMGAASSSMV PYSWEYEKIS WDFEERSIAK SACGSSYVSA TTGDVVDDIG HMDHFKMETG  420
SPTFVDILKN SFAYDPLLKL L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-17	79	135	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:11798174}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g015000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt and drought stresses. {ECO:0000269\|PubMed:10809011, ECO:0000269\|PubMed:9707537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019096694.1	0.0	PREDICTED: dehydration-responsive element-binding protein 2B-like
Swissprot	O82133	1e-113	DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBL	R0G5H1	1e-129	R0G5H1_9BRAS; Uncharacterized protein
STRING	XP_010486732.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2874	17	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11020.1	1e-106	DRE/CRT-binding protein 2B

Publications ? help Back to Top
Djafi N, et al. The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase. Front Plant Sci, 2013. 4: p. 307 [PMID:23964284] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim K, et al. Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants. Mol. Cells, 2014. 37(2): p. 109-17 [PMID:24598995] Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana. Plant Cell Rep., 2015. 34(5): p. 843-52 [PMID:25627253] Lee SY,Boon NJ,Webb AA,Tanaka RJ Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana. Plant Cell Physiol., 2016. 57(10): p. 2147-2160 [PMID:27497445]