PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g013530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 440aa    MW: 50050.7 Da    PI: 8.4554
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g013530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.51.5e-22112216186
        trihelix   1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                     +Wt+ +v++Li a+ +++++ + +                   +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++
  Csa19g013530.1 112 KWTDTMVRLLIMAVFYIGDEAGLNDpidvkkkgggggggggmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGiACRVV 206
                     7**************9988888655566667788888999999**********************************************89**** PP

        trihelix  77 stcpyfdqle 86 
                     ++  ++++++
  Csa19g013530.1 207 ENQGLLESMD 216
                     ***9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.3E-20110242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MESNVMFSGF SPRMLSLEMP QNPQNPKTVH QFQHPHPYTN SNDQQTQPPI KQPLYPSYAS  60
AAPSKLKQLS PISGGCNGDD EDRGSGSGSG CNPEDSAGTD GKRKLSQWHR MKWTDTMVRL  120
LIMAVFYIGD EAGLNDPIDV KKKGGGGGGG GGMLQKKGKW KSVSRAMVEK GFSVSPQQCE  180
DKFNDLNKRY KRVNDILGKG IACRVVENQG LLESMDHLTP KLKDEVKKLL NSKHLFFREM  240
CAYHNSCGHL GGHDQQPPPQ QNPVSVQQNC FHAAEAGKMA RIAERGEVEV ESDMAEDSES  300
ESEMEESEEE EEEETTKKKR RKVLTMAVKR LREEAARVME DVGKSVWEKK EWMRRKMLEV  360
EEKKIGYEWE GVEMEKQRVK WLRYRSKKER EMEKAKLDNQ RRRLETERMV LMLRRSEIEL  420
NELQQSSGKR VDPSSAATR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316320KKKRR
2316321KKKRRK
3317321KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g013530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486586.10.0PREDICTED: uncharacterized protein LOC104764701
TrEMBLR0HSJ60.0R0HSJ6_9BRAS; Uncharacterized protein
STRINGXP_010486586.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors