PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g012840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 510aa    MW: 56441.7 Da    PI: 7.4747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g012840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-1683129148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av  + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   Csa19g012840.1  83 KGGWTPEEDETLRQAVGTFKGKSWKKIAEFFN-DRTEVQCLHRWQKVL 129
                      688*****************************.************986 PP
2Myb_DNA-binding62.67.7e-20135181148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde++v++vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
   Csa19g012840.1 135 KGPWTQEEDEKIVELVKRYGPAKWSVIAQSLP-GRIGKQCRERWHNHL 181
                      79******************************.*************97 PP
3Myb_DNA-binding54.62.6e-17187230146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+  l++a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa19g012840.1 187 KDAWTSEEEVALINAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 230
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.48678129IPR017930Myb domain
SMARTSM007174.1E-1482131IPR001005SANT/Myb domain
PfamPF002494.7E-1583129IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-1584139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-1985138IPR009057Homeodomain-like
CDDcd001671.37E-1286129No hitNo description
PROSITE profilePS5129431.569130185IPR017930Myb domain
SuperFamilySSF466894.87E-32132228IPR009057Homeodomain-like
SMARTSM007171.3E-17134183IPR001005SANT/Myb domain
PfamPF002492.6E-18135181IPR001005SANT/Myb domain
CDDcd001678.16E-16137181No hitNo description
Gene3DG3DSA:1.10.10.601.6E-27139188IPR009057Homeodomain-like
PROSITE profilePS5129422.017186236IPR017930Myb domain
SMARTSM007174.9E-17186234IPR001005SANT/Myb domain
PfamPF002493.0E-15187230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-23189235IPR009057Homeodomain-like
CDDcd001672.94E-13189232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSCSLNPAAT SPDEMDLQEE TGEVKIEDKC VENKQSAPAS CSSVSEGSAG SSHKSPPTVA  60
SPATASPAHR YLGRTSGPIR RAKGGWTPEE DETLRQAVGT FKGKSWKKIA EFFNDRTEVQ  120
CLHRWQKVLN PDLVKGPWTQ EEDEKIVELV KRYGPAKWSV IAQSLPGRIG KQCRERWHNH  180
LNPDINKDAW TSEEEVALIN AHRIYGNKWA EIAKVLPGRT DNAIKNHWNS SLKKKSDFYL  240
VTGRLPPPPT PKNGVPDSVT KRSSSAQKRC SDSVTQTPSR TTDVKNADES GNGQLNSSVP  300
LEEIGAASRM TGVNEYACSP KFLNPEPLPE NGGVAMNGYH LYYKPQTEYY VASEVDTQRM  360
DGHDCGCSPI ASPVSFFTPP PCRNKYSNGS TPRSPESFLR EAARTYPNTP SIFRKRRPRV  420
VVPDDNTAAK TDEAKEVDQK VNHGKDSSES PDSEEIQNNG SNAYNLSPPY RIRSKRTAVF  480
KSRQLEFISA EEEKADDETK SAEKDMLID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-68822355158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-68822355158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g012840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1426490.0AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBankAY5196510.0AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486504.10.0PREDICTED: transcriptional activator Myb-like isoform X1
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLR0HXM60.0R0HXM6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010486504.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.20.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]