PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g012680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 393aa    MW: 42561.1 Da    PI: 4.8177
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g012680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-1757102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v+++G+++W++ ar ++ gR++k+c++rw + 
   Csa19g012680.1  57 KGPWSPEEDVVLSELVEKFGPRNWSLMARSIP-GRSGKSCRLRWCNQ 102
                      79******************************.***********985 PP
2Myb_DNA-binding50.35.5e-16109153147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+ Ed+ +++a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
   Csa19g012680.1 109 RNSFTAVEDQAIIRAHAIHGNK-WAVIAKILP-GRTDNAIKNHWNST 153
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.61652107IPR017930Myb domain
SuperFamilySSF466894.49E-3054150IPR009057Homeodomain-like
SMARTSM007171.2E-1456105IPR001005SANT/Myb domain
PfamPF002492.7E-1657102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2458110IPR009057Homeodomain-like
CDDcd001675.71E-1459101No hitNo description
SMARTSM007175.1E-16108156IPR001005SANT/Myb domain
PROSITE profilePS5129419.217108158IPR017930Myb domain
PfamPF002492.8E-14109153IPR001005SANT/Myb domain
CDDcd001672.76E-12111154No hitNo description
Gene3DG3DSA:1.10.10.601.0E-22111157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEGEIVRRSG FREVQESVAI GRGDGDGDGD GDGDGGEDAA GFVEERASGR GGKDRVKGPW  60
SPEEDVVLSE LVEKFGPRNW SLMARSIPGR SGKSCRLRWC NQLDPSVKRN SFTAVEDQAI  120
IRAHAIHGNK WAVIAKILPG RTDNAIKNHW NSTLRRRFMD EKAKNMGAGS LVVEEDPGFD  180
RTATIALPEE ILSSGDGGHV TTPIVSPEVK GAASMEMPEE QCVEETNGEV ISRQDGNDPP  240
TLFRPVARLS SFNSAYNHME GSSSPHIQDK NQFQSSKQDT AMLRVVEGSY SEQFVPPTCG  300
NGCCSENPVQ QDSLLGPDFV DYLDPPTIPS YELAAIATDI SSLAWLRSGL ESSSVKAMEE  360
AAGRLRSQGS RGHRDHYLVS EQGKNITNVL ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39511571107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g012680.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486483.10.0PREDICTED: myb protein-like
SwissprotQ425750.0MYB1_ARATH; Transcription factor MYB1
TrEMBLD7L7T00.0D7L7T0_ARALL; ATMYB1
STRINGXP_010486483.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.10.0myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]