PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g012450.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 276aa MW: 30626.8 Da PI: 9.892

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g012450.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.7	2.1e-07	26	46	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 k rr+++NReAAr+sR+RKk Csa19g012450.1 26 KTLRRLAQNREAARKSRLRKK 46 6789****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50011	9.432	1	275	IPR000719	Protein kinase domain
PROSITE pattern	PS00036	0	29	44	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.10.510.10	2.8E-11	191	235	No hit	No description
SuperFamily	SSF56112	1.93E-11	195	232	IPR011009	Protein kinase-like domain
Pfam	PF00069	2.3E-8	198	232	IPR000719	Protein kinase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006468	Biological Process	protein phosphorylation
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MLRSVGLRWF LSLPARKMKT PSSICKTLRR LAQNREAARK SRLRKKLFAN SKISLGHRTF 60 RHMFQQLENS QLKLTQLEQE LQRARQQLIA NQLEPLIEQQ SLDINNLQQS SQQAEDALSQ 120 GMENLQQSLA DTLSSGTLGS SLSGNVASYN GSDGHGDGEV STSNYTAFTV THMLYLSFGL 180 QQSVFCFPGP RACKHVWRST SGTPLYMAPE LVREQPYNHT ADLWSLGVIL LLSASELRAI 240 SYARDGQGIY LKALVNICGA AARVWYDTAS ALSMN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g012450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010697	5e-91	AB010697.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOJ9.
GenBank	CP002688	5e-91	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028063110.1	2e-31	transcription factor TGA6-like isoform X4
Swissprot	Q39163	2e-19	TGA5_ARATH; Transcription factor TGA5
TrEMBL	A0A3Q8TD58	1e-39	A0A3Q8TD58_ACTDE; Basic leucine zipper protein 1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06960.2	4e-21	OCS-element binding factor 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234] Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins. PLoS ONE, 2016. 11(4): p. e0153216 [PMID:27073862] Huang LJ, et al. Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana. BMC Plant Biol., 2016. 16(1): p. 200 [PMID:27624344]