PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g011860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 326aa    MW: 36616.6 Da    PI: 7.7435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g011860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.6e-06527326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    + lC+ f+  G C  G++C F+H+
  Csa19g011860.1  5 RILCK-FFVHGSCLKGENCEFSHD 27
                    569**.7777*************6 PP
2zf-CCCH26.11.5e-083555526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G+C yG+rC++ H+
  Csa19g011860.1 35 VCTFYQK-GICLYGSRCRYDHV 55
                    5******.*************7 PP
3zf-CCCH20.87e-07111133326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++G++C+ +Hg
  Csa19g011860.1 111 YPICS-FAAAGDCPRGNQCPHMHG 133
                     78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.037229IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7427IPR000571Zinc finger, CCCH-type
PfamPF156632.0E-7760No hitNo description
Gene3DG3DSA:4.10.1000.103.5E-4730IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2493057IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-43156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-53254IPR000571Zinc finger, CCCH-type
SMARTSM003560.028108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.155108135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.105.2E-10161236IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.92E-9172243No hitNo description
CDDcd001620.00224176236No hitNo description
SMARTSM001841.9E-7177234IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.401177235IPR001841Zinc finger, RING-type
PfamPF000974.5E-8177234IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180201210IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.929264293IPR000571Zinc finger, CCCH-type
SMARTSM003560.32264292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSSDRILCKF FVHGSCLKGE NCEFSHDSKD PPNNVCTFYQ KGICLYGSRC RYDHVRASSN  60
VPRPPLTSDS ESLDRSLSST TPSMRNLQQQ QGDINDGDKS SNVYCIHPRE YPICSFAAAG  120
DCPRGNQCPH MHGDLCATCG KKCLHPFRPE EREEHTKECV KKQKHIEALK RSQDIDCSVC  180
LDRVLSKATP GERKFGLLTE CDHPFCIQCI RNWRSSAPVS GMDVNSTLRA CPICRKLSYF  240
VVPSVVWYST PEEKKEIIDI YKAKLRSIDC KHFNFGNGSC PFGASCFYKH AYSDGHLEEV  300
VLRHLGTQEG DNIRLSELLG GLQIF*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g011860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0703660.0AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486388.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
RefseqXP_010486389.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLR0G6500.0R0G650_9BRAS; Uncharacterized protein
STRINGXP_010486388.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.20.0C3H family protein