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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g011430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CO-like | ||||||||
Protein Properties | Length: 374aa MW: 40882.1 Da PI: 6.0491 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ Csa19g011430.1 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44 6*****************************65677777776 PP | |||||||
2 | zf-B_box | 24.8 | 4.7e-08 | 46 | 95 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.............Htvv 40 +C++++ ++++ C + ++ lC++C ++H++ H+++ Csa19g011430.1 46 LICERCNAQPATVRCVEERVSLCQNCDWSGHNNnnssssassspqqHKRQ 95 68*****************************8877777777777777765 PP | |||||||
3 | CCT | 60.4 | 6.1e-21 | 316 | 359 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ Csa19g011430.1 316 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 359 99***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.897 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.30E-8 | 4 | 47 | No hit | No description |
SMART | SM00336 | 2.5E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.873 | 43 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.01E-5 | 47 | 76 | No hit | No description |
SMART | SM00336 | 1.6 | 48 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.0E-15 | 316 | 358 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.338 | 316 | 358 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLICER CNAQPATVRC 60 VEERVSLCQN CDWSGHNNNN SSSSASSSPQ QHKRQTISCY SGCPSSSELA SIWSFCLDLA 120 GQSICEQELG MMNIDDNNNA PTDKNCNEDN KKDVLVGSST VPETSSAAPG NSSFAKKDVG 180 VCEDDFYGNL GMDEVDLALE NYEELFGVAF NPSEELFGHG GIDSLFQKHQ TATEGGNHVQ 240 PADSNDSFMS SKTEPIICFA SKPAHSNISF SGVTGESSAG DFQECGASSS MQLSGEPPWY 300 PPTSQDNNAC SHSVTRNNAV MRYKEKKKAR KFDKRVRYAS RKARADVRRR VKGRFVKAGE 360 AYDYDPLTPT RSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g011430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK316934 | 0.0 | AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23. | |||
GenBank | BT029490 | 0.0 | BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486334.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 0.0 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | R0HZV4 | 0.0 | R0HZV4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010486334.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 0.0 | CONSTANS-like 9 |