PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g010070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 464aa    MW: 48815.5 Da    PI: 8.0464
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g010070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.16.1e-135883227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H++
  Csa19g010070.1 58 DEPDCIYYMRTGVCGYGSRCRFNHPR 83
                    6899********************96 PP
2zf-CCCH37.15.2e-12106130327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++f+rtGtCk+G++Ck++H++
  Csa19g010070.1 106 HPVCQHFMRTGTCKFGASCKYHHPR 130
                     789********************96 PP
3zf-CCCH391.4e-12152176226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G +C+F+H+
  Csa19g010070.1 152 GEKECSYYMRTGQCKFGLTCRFNHP 176
                     6789********************9 PP
4zf-CCCH406.5e-13309333226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++f+rtG Ck+G++C+++H+
  Csa19g010070.1 309 DQPECQYFMRTGDCKFGSSCRYHHP 333
                     689*********************9 PP
5zf-CCCH30.94.5e-10355380227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + + C +f ++G+Ck+G+ CkF H++
  Csa19g010070.1 355 GVAQCTHFTQNGICKFGPACKFDHSM 380
                     6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-55683IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1085684IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-105883IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-66084IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-56283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619103131IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6104130IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9105130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5108130IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089150178IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10152176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5153177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4156175IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854307335IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10309333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6310336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4313333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554353381IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4353380IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-8355379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5356381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4359380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MERYGRPGEE GSRSDPSLEW TSHGGDTGLE TSMWRLGLSG GGGGGGGGGG EPYPERPDEP  60
DCIYYMRTGV CGYGSRCRFN HPRDRGAVIG GGVRGEAGAL PERMGHPVCQ HFMRTGTCKF  120
GASCKYHHPR QGGSGSVAPV SLSYLGFPLR QGEKECSYYM RTGQCKFGLT CRFNHPVPLA  180
VQGPPQPQQP QPQPQPQLQT IYPTLQSQSV PSSQQYGLVL TRPSLIPGPY LQSPYGPPMV  240
LPPGMVPYPG WHPYQASVSA MPSPGTQPSI GSSSVYGIAP LSPSATVYTG PYQSGPSSNT  300
SKEFPQRPDQ PECQYFMRTG DCKFGSSCRY HHPVDAVPPK TGLVLSSIGL PLRPGVAQCT  360
HFTQNGICKF GPACKFDHSM SSSLSYSPSA SSLTDMPVAP YPIRSSSLSG SSAPASSSNE  420
PTTEAATAAV SSSIVSSLSR PEPAETSGDS ASVSGSTEAK TSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g010070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486149.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4M3D60.0V4M3D6_EUTSA; Uncharacterized protein
STRINGXP_010486149.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]