PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g009920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 764aa    MW: 87833.1 Da    PI: 8.1477
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g009920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.71.2e-2043117189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++++++eHnHel
  Csa19g009920.1  43 DYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 117
                     69**************************************876..............589***************************98 PP
2FAR168.41.8e-21203279191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k++++g w v++l+++HnHel p
  Csa19g009920.1 203 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 279
                     6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1643117IPR004330FAR1 DNA binding domain
PfamPF031017.0E-17203279IPR004330FAR1 DNA binding domain
PfamPF105513.6E-25375467IPR018289MULE transposase domain
PROSITE profilePS5096610.175649685IPR007527Zinc finger, SWIM-type
PfamPF044347.1E-7656682IPR007527Zinc finger, SWIM-type
SMARTSM005754.6E-7660687IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MVVKAYPLGM RIMNHNGIGE DEGDSRVEPY VGLEFDTAEE ARDYYNSYAT RTGFKVRTGQ  60
LYRSRTDGTV SSRRFVCSKE GFQLNSRTGC PAFIRVQRRD TGKWVLDQIQ KEHNHELGGQ  120
VEETTPRPSV QQRAPTPTKL GISVPHRPKM KVVDEADKGR SCPSGVISFK RFKGAEESDG  180
QTQPKATEPY AGLEFSSANE ACQFYQAYAE VVGFRVRIGQ LFRSKVDGSI TSRRFVCSKE  240
GFQHPSRMGC GAYMRIKRQD SGGWIVDRLN KDHNHELEPG KKNAGMKKIT EDVTGGLDSV  300
DLIELNDFSN HISKARENTI GKEWYPVLFD YFQSKQAEDM GFFYAVELDS NGSCMSIFWA  360
DSRSRFACSQ FGDAVVFDTS YRKGEYSVPF AMFIGFNHHR QPVLLGGALV ADESKEAFSW  420
LFQTWLRAMS GRRPRSIVAD QDLPIQQAVA QVFPGAHHRF SAWQIRSKER ENLGSFPNEF  480
KYEYEKCLYQ SQTTVEFDTM WSALVNKYGL RENMWLREIY EKRENWVPAY LRASFFGGIP  540
VNGTIEPFYG TSLNSLTSLT EFISRYEQGL EQRREEERKE DFNSYNLQPF LQTKEPVEEQ  600
CRRLYTLTIF RIFQSELAQS YNYLGLKTYE EGAISRFLVR KCGNENEKHA VTFSASNLNA  660
SCSCQMFEYE GLLCRHIFKV FNLLDIRELP SRYILHRWTK NAEFGFVRDV ESGVTSQDLK  720
ALMIWSLREA ASKYIEFGTS SLEKYKLAYE IMREGGKKLC WQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g009920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3602700.0AF360270.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBankATAC0189070.0AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankAY1504460.0AY150446.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486119.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X2
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLR0HJN80.0R0HJN8_9BRAS; Uncharacterized protein
TrEMBLR0I0R30.0R0I0R3_9BRAS; Uncharacterized protein
STRINGXP_010486114.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]