PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g009920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 764aa MW: 87833.1 Da PI: 8.1477 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.7 | 1.2e-20 | 43 | 117 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnHel Csa19g009920.1 43 DYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 117 69**************************************876..............589***************************98 PP | |||||||
2 | FAR1 | 68.4 | 1.8e-21 | 203 | 279 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++k++++g w v++l+++HnHel p Csa19g009920.1 203 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 279 6***************************************9994..............799***************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-16 | 43 | 117 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 7.0E-17 | 203 | 279 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.6E-25 | 375 | 467 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.175 | 649 | 685 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.1E-7 | 656 | 682 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.6E-7 | 660 | 687 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MVVKAYPLGM RIMNHNGIGE DEGDSRVEPY VGLEFDTAEE ARDYYNSYAT RTGFKVRTGQ 60 LYRSRTDGTV SSRRFVCSKE GFQLNSRTGC PAFIRVQRRD TGKWVLDQIQ KEHNHELGGQ 120 VEETTPRPSV QQRAPTPTKL GISVPHRPKM KVVDEADKGR SCPSGVISFK RFKGAEESDG 180 QTQPKATEPY AGLEFSSANE ACQFYQAYAE VVGFRVRIGQ LFRSKVDGSI TSRRFVCSKE 240 GFQHPSRMGC GAYMRIKRQD SGGWIVDRLN KDHNHELEPG KKNAGMKKIT EDVTGGLDSV 300 DLIELNDFSN HISKARENTI GKEWYPVLFD YFQSKQAEDM GFFYAVELDS NGSCMSIFWA 360 DSRSRFACSQ FGDAVVFDTS YRKGEYSVPF AMFIGFNHHR QPVLLGGALV ADESKEAFSW 420 LFQTWLRAMS GRRPRSIVAD QDLPIQQAVA QVFPGAHHRF SAWQIRSKER ENLGSFPNEF 480 KYEYEKCLYQ SQTTVEFDTM WSALVNKYGL RENMWLREIY EKRENWVPAY LRASFFGGIP 540 VNGTIEPFYG TSLNSLTSLT EFISRYEQGL EQRREEERKE DFNSYNLQPF LQTKEPVEEQ 600 CRRLYTLTIF RIFQSELAQS YNYLGLKTYE EGAISRFLVR KCGNENEKHA VTFSASNLNA 660 SCSCQMFEYE GLLCRHIFKV FNLLDIRELP SRYILHRWTK NAEFGFVRDV ESGVTSQDLK 720 ALMIWSLREA ASKYIEFGTS SLEKYKLAYE IMREGGKKLC WQR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g009920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF360270 | 0.0 | AF360270.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds. | |||
GenBank | ATAC018907 | 0.0 | AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence. | |||
GenBank | AY150446 | 0.0 | AY150446.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486119.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X2 | ||||
Swissprot | Q9M8J3 | 0.0 | FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | R0HJN8 | 0.0 | R0HJN8_9BRAS; Uncharacterized protein | ||||
TrEMBL | R0I0R3 | 0.0 | R0I0R3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010486114.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5730 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 0.0 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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