PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g007130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 453aa MW: 49461.8 Da PI: 4.5518 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 120.2 | 1e-37 | 137 | 235 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 lfqrlw++eDei lL+G++d+ ++++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+k Csa19g007130.1 137 LFQRLWTDEDEIELLRGFLDYmTTHRGSSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRK 231 79*******************888999999999************************************************************** PP DUF573 95 iWgs 98 iW++ Csa19g007130.1 232 IWNQ 235 **85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.4E-34 | 138 | 234 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MTSDHRDAVF SLESPDLEEG GVGDGGESET DEDLRENDDV DVVIPETNEA EAEDDDPEEE 60 DLNSPSTSSL AMVSTISATA VVSGTPTTNS STGAVTVALP AGSAVPVSVI PVDSDPKWHR 120 MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTT HRGSSSHPPD TAPFYEQIKS 180 KLQLEFNKNQ LVEKLRRLKK KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII 240 GFEDNNVMDF DETSNHHNTN GNYSTFNSPS SNPELDSENG VEKKLTMSSS SGSRKRSRSR 300 IGKIEEDNKP IITPFDGQIP NAASNVNLNE TAAAISMGGN LGGLIEETVK NCVSPVIKEL 360 MNGTTSVMMA AMGGGGFPGS GGGFGSLSPM FTRQMNFGFG VEGGGGGNKA VADERWRKQQ 420 ILELEVYSRR LELVQEQIRT TLNELKTMPS GV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 294 | 299 | KRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g007130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493601 | 0.0 | AB493601.1 Arabidopsis thaliana At3g04930 mRNA for hypothetical protein, partial cds, clone: RAAt3g04930. | |||
GenBank | AC009465 | 0.0 | AC009465.7 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485881.1 | 0.0 | PREDICTED: probable transcription factor At3g04930 | ||||
Swissprot | Q9CAV7 | 0.0 | STKLJ_ARATH; Probable transcription factor At3g04930 | ||||
TrEMBL | R0I2K6 | 0.0 | R0I2K6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010485881.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3098 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator |