 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa19g005910.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
LBD |
| Protein Properties |
Length: 274aa MW: 29003.3 Da PI: 7.7055 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa19g005910.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 127.3 | 7.1e-40 | 53 | 154 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael
Csa19g005910.1 53 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 147
7***********************9989******************************************************************* PP
DUF260 95 allkeel 101
++++++l
Csa19g005910.1 148 SVVQSQL 154
***9985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:1900150 | Biological Process | regulation of defense response to fungus |
| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MADQQRPHNT SDSRRKSLAG RRTSQQTPTT SSLSSGGGSI AAATTTGTGT ASPCGACKFL 60
RRKCVSGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLH HIPVNRRHDA VVTISYEAQA 120
RLSDPVYGCV STILALQQQV ASLQAELSVV QSQLINSRVA MANVMQQHTH HQQQQLVVMQ 180
QPEYSNNSSA STTLAGAAMN SFTVAAEAAA VSYDVMAPTN LEHSLPPMPP HQQSRGDQHH 240
EDEEESGADF SVAVGSTAVA SDVIFPAEGF HRR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB473854 | 0.0 | AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds. |
| GenBank | AK118291 | 0.0 | AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13. |
| GenBank | BT008589 | 0.0 | BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds. |
