PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g004940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 402aa    MW: 44565 Da    PI: 8.0134
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g004940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.1e-114167127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H++
  Csa19g004940.1 41 PGEPDCSYYIRTGLCRFGSTCRFNHPR 67
                    5789*********************96 PP
2zf-CCCH37.63.8e-1288112327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++++tGtCk+G +CkF+H++
  Csa19g004940.1  88 QPECEYYLKTGTCKFGVTCKFHHPR 112
                     799********************96 PP
3zf-CCCH36.39.1e-12134158327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f+rtG+Ck+G++CkF+H++
  Csa19g004940.1 134 EVDCAYFLRTGHCKFGGTCKFNHPQ 158
                     578********************97 PP
4zf-CCCH37.15.3e-12276302127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G  CkF+H++
  Csa19g004940.1 276 PGQPECQFYMKTGDCKFGTVCKFHHPR 302
                     5789*********************96 PP
5zf-CCCH35.41.9e-11322348127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f+ r+G+Ck+G++CkF H++
  Csa19g004940.1 322 PGEPLCVFYTRYGICKFGPSCKFDHPM 348
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.0E-54067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6994068IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-64568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-44667IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10885113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-988112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-491112IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6134160IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22275303IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6279304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4281303IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7321348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187321349IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8323348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5324348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4326346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMNQDA MWQMNLGSEE TMETGSYPER PGEPDCSYYI RTGLCRFGST  60
CRFNHPRDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR  120
VSLNMLGYPL RSNEVDCAYF LRTGHCKFGG TCKFNHPQPQ PTNMMVPTSG QQSYPWSRAS  180
FIASPRWQDP STYPSLIMPQ GVVPVQGWNP YSGQLGSVSP SGTRNDLNNY RSLQQSETKE  240
SGSQSQGSFS GFNPGSSVPL GGFYALPREN VFPERPGQPE CQFYMKTGDC KFGTVCKFHH  300
PRDRQAPPPD CLLSSIGLPL RPGEPLCVFY TRYGICKFGP SCKFDHPMRV FAYDNTASET  360
DEVVETSSSG HSRRISVSET RQAAATTTSS GKDTTIIDTQ H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g004940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485612.10.0PREDICTED: zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A178VJ680.0A0A178VJ68_ARATH; ZFN1
STRINGXP_010485612.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]