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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g002760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 365aa MW: 40517.7 Da PI: 7.3276 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.6 | 8.2e-33 | 72 | 193 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s+++++ ++++s + ++ + Csa19g002760.1 72 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSlfNHHQSFLNLGQRPVHqdptql 166 689*************************************************************9999988877666666666644444566667 PP TCP 89 .............kaaksaakskksqksaa 105 s+ + ++++k ++ Csa19g002760.1 167 gfkinggcveetsT---SSREVNNKEKGDN 193 77777777764331...2222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.6E-29 | 74 | 181 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.314 | 74 | 132 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MNIVPWKDAN DEVSGGALAR REGDVEEDQE EDQARATSGK TVIKKPPTSI SSSSSSWMKS 60 KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI QLYDLQERLG VDQPSKAVDW 120 LLDAAKEEID ELPPLPISPE NFSLFNHHQS FLNLGQRPVH QDPTQLGFKI NGGCVEETST 180 SSREVNNKEK GDNDVVFTNN HHHIGSYGTY HHNMEHHHHH HHQHQHLSFQ GDYHQHQLHS 240 LVPFPSQILV CPMTTSTTKT TIQSLFPSSS SAGSGTMETI DPRQMASHFQ MPLMGNSSSS 300 SSQNISTLYS LLHGSSSNNN GGRDINNRMP YVQFSRDNTT TAASMSKLRG SESSSTSRGS 360 EHHM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 79 | 133 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 79 | 133 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g002760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB014465 | 0.0 | AB014465.1 Arabidopsis thaliana mRNA for TFPD, complete cds. | |||
GenBank | ATAC009755 | 0.0 | AC009755.7 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence. | |||
GenBank | ATAC011664 | 0.0 | AC011664.10 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence. | |||
GenBank | BT001982 | 0.0 | BT001982.1 Arabidopsis thaliana expressed protein (At3g02150) mRNA, complete cds. | |||
GenBank | BT008839 | 0.0 | BT008839.1 Arabidopsis thaliana At3g02156 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485452.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Swissprot | Q9S7W5 | 0.0 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | A0A178VKM0 | 0.0 | A0A178VKM0_ARATH; TFPD | ||||
STRING | XP_010485452.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 1e-176 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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