PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g040640.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 475aa MW: 52292.2 Da PI: 7.1675

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g040640.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.5e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vhk+FGasnv kll++l ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql+++l+ Csa18g040640.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQLQHDLE 101 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e Csa18g040640.1 102 NAKKE 106 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.003	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR 60 EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQLQHDL ENAKKELATY VGPQAMLPIL 120 QPPQPHFMSL PPQPPQRPSS SSASVLTQHH HNLLPMMAIP TGQLYQQQQQ QIFEAQQLAA 180 VAREQQNEMF RAYGGGGGSS SPHHQNQAQV EILRFNNGFD SIPTGSVTVT GFNQLSSGEG 240 GILKXRLKQL QHDLENAKKE LATYVGPQAM LPILQPPQPH FMSLPPQPPQ RPSSSSASVL 300 TQHHHNLLPM MAIPTGQLYQ QQQQQIFEAQ QLAAVAREQQ NEMFRAYGGG GGSSSPHHQN 360 QAQVEILRFN NGFDSIPTGS VTVTGFNQLS SGGTAVTGMS LGGNFVDDSP STNNNNYHTD 420 QQLHHHHHQQ QQHHEAQLFI PTQSSQPLPL QTQETQTQTQ PNSESEEGRR SVIG*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR  60
EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQLQHDL ENAKKELATY VGPQAMLPIL  120
QPPQPHFMSL PPQPPQRPSS SSASVLTQHH HNLLPMMAIP TGQLYQQQQQ QIFEAQQLAA  180
VAREQQNEMF RAYGGGGGSS SPHHQNQAQV EILRFNNGFD SIPTGSVTVT GFNQLSSGEG  240
GILKXRLKQL QHDLENAKKE LATYVGPQAM LPILQPPQPH FMSLPPQPPQ RPSSSSASVL  300
TQHHHNLLPM MAIPTGQLYQ QQQQQIFEAQ QLAAVAREQQ NEMFRAYGGG GGSSSPHHQN  360
QAQVEILRFN NGFDSIPTGS VTVTGFNQLS SGGTAVTGMS LGGNFVDDSP STNNNNYHTD  420
QQLHHHHHQQ QQHHEAQLFI PTQSSQPLPL QTQETQTQTQ PNSESEEGRR SVIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	4	110	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g040640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010700	0.0	AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21.
GenBank	AB164303	0.0	AB164303.1 Arabidopsis thaliana ASL1 mRNA for ASYMMETRIC LEAVES2-like gene 1 protein, complete cds.
GenBank	AB473834	0.0	AB473834.1 Arabidopsis thaliana ASL1 mRNA for ASYMMETRIC LEAVES2-like 1 protein, complete cds.
GenBank	BT044058	0.0	BT044058.1 Arabidopsis thaliana unknown protein (At5g66870) mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280835.1	1e-149	LOB domain-containing protein 36
Swissprot	Q9FKZ3	1e-146	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A178UE79	1e-148	A0A178UE79_ARATH; LBD36
STRING	Cagra.20099s0001.1.p	1e-149	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8008	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-132	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]