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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g040530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 161aa MW: 18922.1 Da PI: 10.6356 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84 | 1.4e-26 | 41 | 90 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL++++T LK++CR++GI+RWPhRk++sl Csa18g040530.1 41 SRLSREMMKQYFYMPIAKAAKELNIGVTFLKKKCRELGIPRWPHRKLSSL 90 67999******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.326 | 26 | 110 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.2E-21 | 43 | 90 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MGDPNVEKIC YEDDNTKTLK ETGRQKRIIV KRRYREDMVS SRLSREMMKQ YFYMPIAKAA 60 KELNIGVTFL KKKCRELGIP RWPHRKLSSL NTLITNLKDS LRNTEETNKS KLRNALELLE 120 MEKKMIEEVP DSKLGEKTKR LRQACFKANY KQRRVFSSSS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g040530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019088062.1 | 1e-104 | PREDICTED: protein RKD3-like | ||||
Swissprot | Q9FGD1 | 1e-82 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | R0GPV5 | 7e-85 | R0GPV5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010444707.1 | 1e-104 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12180 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-73 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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