PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g040290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 337aa MW: 37714.8 Da PI: 7.7033 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.7 | 1.4e-13 | 173 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW++++ + + k+++lg f+t+ eAa+a+++a+ k +g Csa18g040290.1 173 SKFRGVTLHK-CGRWESRLGQF----LNkKYVYLGLFDTEIEAARAYDKAAIKCNG 223 79********.7****995553....234**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-5 | 100 | 139 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-6 | 101 | 144 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.93E-23 | 173 | 231 | No hit | No description |
Pfam | PF00847 | 1.2E-8 | 173 | 223 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-16 | 173 | 232 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-16 | 174 | 231 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.066 | 174 | 231 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-30 | 174 | 237 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 175 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 213 | 233 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MWNLNDSPDH HEASDSRGNR FGHVSNYMSQ STTWLSSVPP VTRNFFPSQV MEPGIYGSGF 60 NRSQGGGKSD PSGSGRPDEL APEISPPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHICA 120 YDRAAIKFRG VDADINFDIE DYVDDLKQMG NLTKEEFMHV LRRQSTGFPR GSSKFRGVTL 180 HKCGRWESRL GQFLNKKYVY LGLFDTEIEA ARAYDKAAIK CNGKDAVTNF DPKVYEEEEL 240 IISSELKWND HSLDLCLGES SSEELGFRSE IASLTNRIGD EERLLGSDLS LAMTTTAVRS 300 DGGGSRVGMA ASSGFSPHPS SPWHHPTPNN FHFFRH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g040290.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484535.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | Q9FH95 | 1e-172 | TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3 | ||||
TrEMBL | R0EWM5 | 0.0 | R0EWM5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010484535.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67180.1 | 1e-156 | target of early activation tagged (EAT) 3 |
Publications ? help Back to Top | |||
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