PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g039620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 469aa    MW: 53348 Da    PI: 8.4612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g039620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++  G+g +W + ++++g++R++k+c++rw++yl
   Csa18g039620.1 14 KGPWSPEEDAKLKDYIENSGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding47.34.6e-15107155148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd +l+d+++  G+g +W + ++++g++R++k+c++rw++yl
   Csa18g039620.1 107 KGPWSPEEDAKLKDYIENSGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 155
                      79*********************************************97 PP
3Myb_DNA-binding36.98.6e-12163204346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++ eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
   Csa18g039620.1 163 GFSDEEDNIICNLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 204
                      699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-20569IPR009057Homeodomain-like
SuperFamilySSF466891.48E-13868IPR009057Homeodomain-like
PROSITE profilePS5129418.929966IPR017930Myb domain
SMARTSM007177.9E-111364IPR001005SANT/Myb domain
PfamPF002496.5E-141462IPR001005SANT/Myb domain
CDDcd001674.56E-71662No hitNo description
PROSITE profilePS5129412.624102155IPR017930Myb domain
SuperFamilySSF466894.08E-25104202IPR009057Homeodomain-like
SMARTSM007177.9E-11106157IPR001005SANT/Myb domain
PfamPF002496.5E-14107155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-23108162IPR009057Homeodomain-like
CDDcd001674.56E-7109155No hitNo description
PROSITE profilePS5129420.991156210IPR017930Myb domain
SMARTSM007176.0E-11160208IPR001005SANT/Myb domain
PfamPF002493.1E-10162204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-23163210IPR009057Homeodomain-like
CDDcd001674.18E-7164206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHER ERERERFKRE KEIKYKQRSR VQKMGRAPCC DKANVKKGPW SPEEDAKLKD  120
YIENSGTGGN WIALPQKIGL RRCGKSCRLR WLNYLRPNIK HGGFSDEEDN IICNLYVTIG  180
SRWSIIAAQL PGRTDNDIKN YWNTRLKKKL LNKQRKEFQE ARMKQEMVMM KRQQQGQGQS  240
NGSTDLYLNN MFGSSPWPLL PHQLPPPHHQ IPLLMMEPTS CNYYQTQPSC NLEQKPLITL  300
KNMVKIEEEP EMTNPDHHHQ HQDSMTTPFD FSFSQLLLDP NYYLGSGGVG EGDFTIMSSS  360
TNSPLPNTSG EHHQNQQQEM LQWFGSSNFQ TEAINDMFLS NNNNNNMVNH ETNENTKVYG  420
DSSVAGVGAA LAGGTTSTSA DQSTISWEDI TSLVNSEDAS YFNGPNHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-221072107108B-MYB
1h88_C9e-22142106159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-22142106159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g039620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0629010.0AF062901.1 Arabidopsis thaliana putative transcription factor (MYB68) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444598.10.0PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y91e-123RAX3_ARATH; Transcription factor RAX3
TrEMBLR0EZQ60.0R0EZQ6_9BRAS; Uncharacterized protein
STRINGXP_010444598.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-178myb domain protein 68
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]