PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa18g038800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | EIL | ||||||||
Protein Properties | Length: 354aa MW: 40535.3 Da PI: 4.286 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 96.3 | 6.4e-30 | 38 | 125 | 1 | 84 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn....ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpv 84 ++lkkrmwkd++l+++lk++k+++ + +++ ++ s+ ++ e +rrkkm+r+QD++LkYM+k+mevc+aqGfvYgi+pek +++ Csa18g038800.1 38 DDLKKRMWKDRNLMCKLKQQKRDNHNISSPSSSSPVSSsaivRRAEGSRRKKMARSQDSVLKYMMKIMEVCKAQGFVYGIVPEKARLK 125 79*********************9988888855555546777******************************************9876 PP | |||||||
2 | EIN3 | 34 | 5.9e-11 | 127 | 238 | 274 | 353 |
XXXXXXXXXXXX......................XXXXXX.XXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXX......XXXXX CS EIN3 274 vtlsceqkedve......................gkkeskikhvqavktta............gfpvvrkrkkkpsesakvsskevsrtcqssqf 334 +t+s+++++d++ +++e+ ++ +++k+t+ ++p+ +krk +++e++ ++ ++v +tcq+s++ Csa18g038800.1 127 LTISDDEDKDRDqepsgftcfdkesplnpcflvaQDQEPAVS-LRKDKRTDqewspnacfladQEPFGNKRKGEFVEQQEAMLSNV-YTCQNSSC 219 555555555555455555554444444444444344444433.33444433788888888888**************999998876.******** PP XX.XXXXXXXXXXXXXXXX CS EIN3 335 rgsetelifadknsisqne 353 ++s+++l+f dkn ++ +e Csa18g038800.1 220 PSSDVSLGFVDKNLRTGHE 238 ****************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 5.0E-28 | 38 | 123 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MVEVQDLEPL SPIQDEDDDD FEEDEGEFDR FGEDISYDDL KKRMWKDRNL MCKLKQQKRD 60 NHNISSPSSS SPVSSSAIVR RAEGSRRKKM ARSQDSVLKY MMKIMEVCKA QGFVYGIVPE 120 KARLKRLTIS DDEDKDRDQE PSGFTCFDKE SPLNPCFLVA QDQEPAVSLR KDKRTDQEWS 180 PNACFLADQE PFGNKRKGEF VEQQEAMLSN VYTCQNSSCP SSDVSLGFVD KNLRTGHEIE 240 CLYGNQEPMN HSSGGSDGFV RSMTTSDDDY SASSRAEDTR DYHNQDGNWL DYLWFERLHD 300 LNCSDQGFED QTSTAVDLNQ LPDHSDSNQT MNRENFSLWD MGCEDKDVYM SQD* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa18g038800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB013395 | 0.0 | AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484313.1 | 1e-171 | PREDICTED: ETHYLENE INSENSITIVE 3-like 5 protein | ||||
Swissprot | Q9FJQ5 | 1e-124 | EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein | ||||
TrEMBL | A0A078FNT7 | 1e-141 | A0A078FNT7_BRANA; BnaC03g49200D protein | ||||
STRING | XP_010484313.1 | 1e-170 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16143 | 4 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65100.1 | 1e-127 | EIL family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|