PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g038800.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

EIL

Protein Properties

Length: 354aa MW: 40535.3 Da PI: 4.286

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g038800.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	96.3	6.4e-30	38	125	1	84
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn....ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpv 84 ++lkkrmwkd++l+++lk++k+++ + +++ ++ s+ ++ e +rrkkm+r+QD++LkYM+k+mevc+aqGfvYgi+pek +++ Csa18g038800.1 38 DDLKKRMWKDRNLMCKLKQQKRDNHNISSPSSSSPVSSsaivRRAEGSRRKKMARSQDSVLKYMMKIMEVCKAQGFVYGIVPEKARLK 125 79*******************9988888855555546777****************************************9876 PP
2	EIN3	34	5.9e-11	127	238	274	353
XXXXXXXXXXXX......................XXXXXX.XXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXX......XXXXX CS EIN3 274 vtlsceqkedve......................gkkeskikhvqavktta............gfpvvrkrkkkpsesakvsskevsrtcqssqf 334 +t+s+++++d++ +++e+ ++ +++k+t+ ++p+ +krk +++e++ ++ ++v +tcq+s++ Csa18g038800.1 127 LTISDDEDKDRDqepsgftcfdkesplnpcflvaQDQEPAVS-LRKDKRTDqewspnacfladQEPFGNKRKGEFVEQQEAMLSNV-YTCQNSSC 219 555555555555455555554444444444444344444433.33444433788888888888************999998876.**** PP XX.XXXXXXXXXXXXXXXX CS EIN3 335 rgsetelifadknsisqne 353 ++s+++l+f dkn ++ +e Csa18g038800.1 220 PSSDVSLGFVDKNLRTGHE 238 **************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	5.0E-28	38	123	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MVEVQDLEPL SPIQDEDDDD FEEDEGEFDR FGEDISYDDL KKRMWKDRNL MCKLKQQKRD 60 NHNISSPSSS SPVSSSAIVR RAEGSRRKKM ARSQDSVLKY MMKIMEVCKA QGFVYGIVPE 120 KARLKRLTIS DDEDKDRDQE PSGFTCFDKE SPLNPCFLVA QDQEPAVSLR KDKRTDQEWS 180 PNACFLADQE PFGNKRKGEF VEQQEAMLSN VYTCQNSSCP SSDVSLGFVD KNLRTGHEIE 240 CLYGNQEPMN HSSGGSDGFV RSMTTSDDDY SASSRAEDTR DYHNQDGNWL DYLWFERLHD 300 LNCSDQGFED QTSTAVDLNQ LPDHSDSNQT MNRENFSLWD MGCEDKDVYM SQD*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MVEVQDLEPL SPIQDEDDDD FEEDEGEFDR FGEDISYDDL KKRMWKDRNL MCKLKQQKRD  60
NHNISSPSSS SPVSSSAIVR RAEGSRRKKM ARSQDSVLKY MMKIMEVCKA QGFVYGIVPE  120
KARLKRLTIS DDEDKDRDQE PSGFTCFDKE SPLNPCFLVA QDQEPAVSLR KDKRTDQEWS  180
PNACFLADQE PFGNKRKGEF VEQQEAMLSN VYTCQNSSCP SSDVSLGFVD KNLRTGHEIE  240
CLYGNQEPMN HSSGGSDGFV RSMTTSDDDY SASSRAEDTR DYHNQDGNWL DYLWFERLHD  300
LNCSDQGFED QTSTAVDLNQ LPDHSDSNQT MNRENFSLWD MGCEDKDVYM SQD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g038800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013395	0.0	AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484313.1	1e-171	PREDICTED: ETHYLENE INSENSITIVE 3-like 5 protein
Swissprot	Q9FJQ5	1e-124	EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBL	A0A078FNT7	1e-141	A0A078FNT7_BRANA; BnaC03g49200D protein
STRING	XP_010484313.1	1e-170	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16143	4	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65100.1	1e-127	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]