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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa18g038180.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
NAC |
Protein Properties |
Length: 189aa MW: 21691 Da PI: 4.5356 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa18g038180.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 108.3 | 9.1e-34 | 3 | 118 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdLp k+ +e ++wyf+s++ + r t++gyW + g d++++++
Csa18g038180.1 3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRKT--------QDRLTSNGYWGSMGMDEPIYTS 88
79*************************999.99***************87778899*****9975........47999***************98 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++vg+kk L+fy g++ +t+W+m+ey+l
Csa18g038180.1 89 sTHKKVGIKKYLTFYLGDS----QTNWIMQEYSL 118
77888**********7654....68*******97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPYDPWDLPG KALGEGRQWY 60 FYSRKTQDRL TSNGYWGSMG MDEPIYTSST HKKVGIKKYL TFYLGDSQTN WIMQEYSLPD 120 SSSSSSRSSK RSSRASSSSS HKPDYSKWVI CRVYEQNCSE EEEDDETELS CLDEVFLSLD 180 DLDEVSLP*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-35 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-35 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-35 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-35 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-35 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-35 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-35 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-35 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-35 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-35 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-35 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-35 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-35 | 1 | 162 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-35 | 1 | 162 | 15 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK118783 | 0.0 | AK118783.1 Arabidopsis thaliana At5g64530 mRNA for unknown protein, complete cds, clone: RAFL21-11-N14. |
GenBank | BT025746 | 0.0 | BT025746.1 Arabidopsis thaliana At5g64530 mRNA, complete cds. |