PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g037860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CAMTA | ||||||||
Protein Properties | Length: 1034aa MW: 115204 Da PI: 6.1914 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 188.3 | 7.6e-59 | 19 | 136 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++fq Csa18g037860.1 19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQ 113 45559****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcyw+Le++l +iv+vhylevk Csa18g037860.1 114 RRCYWMLEQDLMHIVFVHYLEVK 136 ********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 86.275 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.6E-87 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.2E-52 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 6.58E-13 | 442 | 526 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 7.46E-19 | 622 | 734 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 19.412 | 623 | 734 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.8E-7 | 624 | 700 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.5E-18 | 624 | 735 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.85E-14 | 635 | 725 | No hit | No description |
SMART | SM00248 | 1600 | 640 | 669 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 8.843 | 640 | 672 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.873 | 673 | 705 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0029 | 673 | 702 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 0.32 | 848 | 870 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 8.23E-8 | 849 | 898 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00612 | 0.002 | 850 | 869 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.858 | 850 | 878 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0092 | 871 | 893 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.304 | 872 | 896 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 4.5E-4 | 874 | 893 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1034 aa Download sequence Send to blast |
MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML 120 EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS 180 GDSRQASSSL QPNPEPQTVV PQIIHHQNAS TMNSYNTASV LGNPDGWTSA PGIGVVSQVH 240 GNRVKESDSQ RSGDVPAWDA SFENSLARYQ NLPYNAPLTQ TQPLQNQVNW QESVPLQKWP 300 MDSHSGMTDT TDLALVGQRG HENFGTFSSL LGSQNQQPSS FQAPFTNNEA AYIPKLGPED 360 LIYEASANQT LPLRKALLKK EDSLKKVDSF SRWVSKELGE MEDLQMQSSS GGIAWTSVEC 420 ETAAAGSSLS PSLSEDQRFT MIDFWPKWTQ TDSEVEVMVI GTFLLSPQEV TSYSWSCMFG 480 EVEVPAEILV DGVLCCHAPP HEVGRVPFYI TCSDRFSSSE VREFDFLPGS TRKLNATDIY 540 GANTIEASLH LRFESLLALR SSVQEHHIFE NVGEKRRKIS KIMLLKDEKE SFLPGTIEKD 600 LTEVEAKERL IREEFEDKLY LWLIHKVTEE GKGPNILDED GQGVLHLAAA LGYDWGIKPI 660 LAAGVSINFR DANGWSALHW AAFSGREDTV AVLVSLGADA GALADPSPEH PLGKTAADLA 720 YGNGHRGISG FLAESSLTSY LEKLTVDAKE NSSADSSGAK AVLTVAERTA TPMSYGDVPE 780 TLSMKDSLTA VLNATQAADR LHQVFRMQSF QRKQLSELGG DNEFDISDEL AVSFAAAKTK 840 KPGHSNGAVH AAAVQIQKKY RGWKKRKEFL LIRQRIVKIQ AHVRGHQVRK QYRAIIWSVG 900 LLEKIILRWR RKGSGLRGFK RDTITKPAEP VCPAPQEDDY DFLKEGRKQT EERLQKALTR 960 VKSMAQYPEA RAQYRRLLTV VEGFRENEAS SSSSALKNNN SNTEEAANYN EEDDLIDIDS 1020 LLDDDSFMSL AFE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g037860.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229403 | 0.0 | AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08. | |||
GenBank | BT010874 | 0.0 | BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484192.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 2 isoform X1 | ||||
Swissprot | Q6NPP4 | 0.0 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | D7MR88 | 0.0 | D7MR88_ARALL; Calmodulin-binding protein | ||||
STRING | XP_010484192.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4082 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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