PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g035710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 698aa    MW: 75734.6 Da    PI: 5.4838
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g035710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.26.4e-223589156
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
                    k +lrW  eL ++F+ea++++ G  kA Pkti e+m+vkg+t++h++SHLQkYR +
  Csa18g035710.1 35 KVKLRWKDELQQKFLEAIDHI-GLRKAMPKTIQEFMNVKGITRTHIASHLQKYRRH 89
                    579******************.9*******************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.0983291IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-223393IPR009057Homeodomain-like
SuperFamilySSF466893.76E-153392IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-223589IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MNGETNSANG SNENGMIAST INSDGGNSHG RAPKKVKLRW KDELQQKFLE AIDHIGLRKA  60
MPKTIQEFMN VKGITRTHIA SHLQKYRRHL KKIKQKTKRA EIAKRINREL TRSASSGLLT  120
LQGSYKCTQL SMENLFKSQL GHSGGQSSLI LNKSASRNYM MQQTRSNLLP VGGGRVLPLN  180
NEMRSFSATP QVSRVPGLGQ YGTPNGSLGM QSNYTGMNVD ANGNLLGADG AGRVDGNAYG  240
SPGAMNLDVN NNPILPSKFG KSLSNGGQTQ SNLLAQMGAW ASRSTLGTSQ APRIGQYGTR  300
NDVYNAGINT NECIDLTGLG GARSNGTPGE NVGTMNNNMT NHGSSTSRLS SPFSSFFASE  360
DRLQRNLNAQ LDGLIPILES MSVNNDDIGN TVNSQFDQNQ YQGQVSAGNH ELSNTALLQK  420
FTSWSFNNHQ DQVGAGNPEL FNNVLLEGNA INNYHQGQVS AGNPNLPNGI ALGENVINNN  480
WSYDNHQGQV SAGNFGLSND ILLEGNAINN WSFNNYQSQV NVGNYELANG VFQNAFGDGS  540
FDTPQGQMNA GYPEFANNVL FERSNWNLND TPTEETFNSV DANSKMFIPN PGMNTITQEE  600
QSRNEQALSY LALNSEMYLP TPNMIAINQE QGSDESTLNS IAASSEMRIP SHTPDMSTLN  660
LEKGVVLAEV PLPPIDQLDW TTEGDCMNFM IDIDDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-153293263ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994LKKIKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g035710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095677.10.0PREDICTED: uncharacterized protein DDB_G0283357-like
TrEMBLR0F0J21e-112R0F0J2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010477928.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62110.12e-62G2-like family protein