PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g034230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 308aa MW: 32767.7 Da PI: 6.9938 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.1 | 1.9e-38 | 46 | 106 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Csa18g034230.1 46 HHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 106 57899****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-35 | 37 | 104 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.7E-33 | 48 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.534 | 50 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 52 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MQDIHDYSMT GGGGGGGGGR FFGGGIGGGG GGDRRMRAHQ NSILNHHQSL KCPRCNSLNT 60 KFCYYNNYNL SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR KAKRSKTKQP TSSSSADKLP 120 TTTQQEHNVE DKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVV PGFDMPNLKL 180 YGNGIEWSTL LGQGSSDGGV FSEIGGFTAA SAIETAPFGF GGKFVNQDDH LKLESETVQQ 240 QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS SGGDQTLFDL TSTVDHAYWS QSQWTSSDQD 300 QNGLYLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 24 | GGRFFGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g034230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB015472 | 0.0 | AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1. | |||
GenBank | AY056413 | 0.0 | AY056413.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds. | |||
GenBank | AY081709 | 0.0 | AY081709.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds. | |||
GenBank | AY085856 | 0.0 | AY085856.1 Arabidopsis thaliana clone 19080 mRNA, complete sequence. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483740.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4 | ||||
Swissprot | Q8LDR0 | 1e-168 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | R0GRD1 | 1e-168 | R0GRD1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010483740.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-151 | OBF binding protein 4 |
Publications ? help Back to Top | |||
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