PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g033810.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 336aa MW: 37284.9 Da PI: 9.8138

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g033810.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.0004	93	110	5	22
TTTEEESSHHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHirt 22 dCg++Fsrk+++ +H Csa18g033810.1 93 DCGTVFSRKDSFISHRTF 110 9**************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-4	51	84	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
LQLHKRGHNL PWKLKQRTNK SQVKKKVYIC PEKSCVHHDP ARALGDLTGI KKHFSRKHGE 60 KKWKCDKCSK KYAVVSDWKA HSKICGSREF RCDCGTVFSR KDSFISHRTF CDVLAEESAK 120 FFSVPSPLAT NTTISTIADT NSPVLVQSQL DQSLTGTGTD LNVNNNNTTL LGKNFTKSDP 180 IPQQANAFPL SPPPTRGTSD SVHNLWKLRE EEYSNQWLLN ECMNNNKSII RKGISTNQED 240 EIKKGNISSG SNSTDANIAS LFSYNQEAGN QASFSATTLL QKVAQMGSSS SSDTSTMLGL 300 MTSSIFNNRM PNSDGLNTKN KDEEWTRDFL GVKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-31	59	124	3	68	Zinc finger protein JACKDAW
5b3h_F	2e-31	59	124	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g033810.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT026428	0.0	BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBank	DQ056731	0.0	DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019095917.1	0.0	PREDICTED: protein indeterminate-domain 13-like
Swissprot	F4JYZ8	0.0	IDD13_ARATH; Protein indeterminate-domain 13
TrEMBL	R0EX59	0.0	R0EX59_9BRAS; Uncharacterized protein
STRING	XP_010483695.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60470.1	1e-151	C2H2 family protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]