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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa18g033540.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
Dof |
Protein Properties |
Length: 245aa MW: 26760.7 Da PI: 9.4956 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa18g033540.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 126.3 | 9.6e-40 | 52 | 110 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
al+cprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknk+s+
Csa18g033540.1 52 LALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 110
5789****************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MDHLLQNQDV FGNYNKAREA MGVSYSSNPT QSDDQDQKKR SAAATRPQPP ELALRCPRCD 60 STNTKFCYYN NYSLTQPRYF CKSCRRYWTK GGTLRNIPVG GGCRKNKRST SSATRSLRTT 120 PEPASHDGKA FSAASFGGYS NNEQIDLSLA FALLNKQPPG SSAHLGFPSE FSSSHQSDME 180 SVFGTSQQKG NTGYAFGNGS SGLDIGMGDS SRVLWGFPWQ MNGESFGMMN IGIVKKYTTN 240 KDLG*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:30626969}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269|PubMed:20220754, ECO:0000269|PubMed:30626969}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493803 | 0.0 | AB493803.1 Arabidopsis thaliana At5g60200 mRNA for hypothetical protein, partial cds, clone: RAAt5g60200. |
GenBank | AK228185 | 0.0 | AK228185.1 Arabidopsis thaliana mRNA for zinc finger protein - like, complete cds, clone: RAFL14-63-H23. |
GenBank | BT005866 | 0.0 | BT005866.1 Arabidopsis thaliana At5g60200 gene, complete cds. |