PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g033410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 524aa    MW: 57344.7 Da    PI: 7.0437
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g033410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.2e-17158207155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Csa18g033410.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 207
                     78*******************......55***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.15E-11158214No hitNo description
PfamPF008471.3E-8158207IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-15158216IPR016177DNA-binding domain
PROSITE profilePS5103217.332159215IPR001471AP2/ERF domain
SMARTSM003801.1E-30159221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16159215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MLDLNLGLDS VTVKGVSLMN QMDESVTSNS SVVNAEASSS CIDGEDELCS TRTVKFQFEI  60
LKGGGGEEDD DDDDGYDDER SAVMMTKEFF PVPRDGINFM DSSAQSSRNT VDISFQRGNQ  120
GGDFIGIGSG GGGDAARVMQ PPSQPVKKSR RGPRSKSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAVKFRGLEA DINFVISDYE EDLKQMANLS KEEVVQVLRR  240
QSSGFSRNNS RYQGVALQKI GGWGAQMEQF HGNMGCDKAA MQWNGRQAAS LIEPHASRMI  300
PEAANVKLDL NLGISLSLGD GPKQKDRAQR LHLVPNSIVC GRNTKMENHM ATASCDTPFN  360
FLKRGSDHLS NRHSLPSAFF SPMMENHMAT ASCDTPFNFL KRGSDHLSNR HSLPSAFFSP  420
MERTLEKGPM LRSHQSFPAR TWQGHDQSSG GTAVAATAPP LFSNAASSGF SLSDTRPPSS  480
PATPHPSQPF FNLNQPGLYV VHPSDYTSQN HHHNLMNHSQ PPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g033410.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0019160.0BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483656.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLR0EVS30.0R0EVS3_9BRAS; Uncharacterized protein
STRINGXP_010483656.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.20.0target of early activation tagged (EAT) 2