PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g032020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 435aa    MW: 49174.9 Da    PI: 9.1816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g032020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-17107153148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed +l+++v+q+G + W+ I++++  gR +kqc++rw+++l
   Csa18g032020.1 107 KGQWTADEDRKLIRLVRQHGERKWAMISEKIE-GRAGKQCRERWHNHL 153
                      799*****************************.*************97 PP
2Myb_DNA-binding46.21e-14160201245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+  lv+ + + G++ W+ Ia+ ++ gRt++++k++w+
   Csa18g032020.1 160 DGWSEEEERVLVESHMRIGNK-WAEIAKLIP-GRTENSIKNHWN 201
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.851102157IPR017930Myb domain
SuperFamilySSF466896.11E-29104200IPR009057Homeodomain-like
SMARTSM007172.5E-15106155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-26108161IPR009057Homeodomain-like
CDDcd001671.92E-14110153No hitNo description
PfamPF139211.3E-18110168No hitNo description
SMARTSM007172.0E-13158206IPR001005SANT/Myb domain
PROSITE profilePS5129416.189158208IPR017930Myb domain
CDDcd001673.28E-10162204No hitNo description
Gene3DG3DSA:1.10.10.602.7E-19162206IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEDRRLVHGA APPLTAVDRF LYGQKNDALF SKKQECSRDQ AIVKTKMSMI ETRSNNRKNT  60
TFGPTREKHL VLTGGNRSPI GEVVTIKRAA RYSQNSTKKR SYMNLIKGQW TADEDRKLIR  120
LVRQHGERKW AMISEKIEGR AGKQCRERWH NHLRPDIKKD GWSEEEERVL VESHMRIGNK  180
WAEIAKLIPG RTENSIKNHW NATKRRQNSK RKHKRESKAD NNDSDGSPSA KRPCILQDYI  240
KSIDNNGIYK NDNDENKNET TISVISTPNL ERQIYSDGDS ASSILDDPYD EELVYLQNIF  300
ANHPISLENI GLSQTSDEVT QSSSSGIMIK SPNLKLHNNI GTHHQEARIA APASTPHLAS  360
DMYLSYLLNG TTSSYFDTLF PSSSSSTSST TVEHGGHNDF LEPQANSTSE RREMDLIEMI  420
SGSIQGSNIC FPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-431052072104MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-4310520756158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-4310520756158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-431052072104C-Myb DNA-Binding Domain
1msf_C1e-431052072104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203214KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g032020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719780.0AF371978.1 Arabidopsis thaliana putative transcription factor MYB119 (MYB119) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483493.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLR0GRY00.0R0GRY0_9BRAS; Uncharacterized protein
STRINGXP_010483493.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]