PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g031490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 454aa    MW: 51239.5 Da    PI: 5.3447
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g031490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-11394450247
                      SSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg........tWktIartmg...kgRtlkqcksrwqky 47 
                      + WT+eE e l ++vk++G+         +Wk I +  +     Rt+ ++k++w+++
   Csa18g031490.1 394 KFWTPEEVEALREGVKEYGNTlclvlygkSWKDIKNGNPavfAERTEVDLKDKWRNL 450
                      67****************************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.038388453IPR017930Myb domain
SuperFamilySSF466892.85E-11390450IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-11390450IPR009057Homeodomain-like
SMARTSM007176.0E-5392453IPR001005SANT/Myb domain
CDDcd116609.25E-15394451No hitNo description
PfamPF002491.4E-8396450IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEIFDNWVAE FVLRRQHNPR VLPTKLISAL QLGDSSDCLK LKISSVLRDI SNSLIRGAID  60
EGTLDLLEVL EKLLLQQHSL LMESHKSAYC WTAAECTLRF MWPLIASDGF FTEALERIWT  120
KRIGVLKERG SDLVSRDLLK WETDLKRALE DPELYQRIRE SNIRYTAITF LTQLLKEQWA  180
LLGSSSLESV VQRRFLKRKA DNVEEDIVDK RGNTNAADES TRRLESDTID NANEPRGESG  240
DGNGNNREND NDVEGVGCLV NEKHASEEEQ TVGAQEQEYE PSLDKGDETA ARELKGYLLE  300
IQGQIDPSTR QREEPNNAID HSVNITPPPT RMNRTGTSGQ DHNEAPDDVN KKGSDSQGTW  360
SGRVRPRRPT PVPLNVSPLK KGGLAKSHVR RPKKFWTPEE VEALREGVKE YGNTLCLVLY  420
GKSWKDIKNG NPAVFAERTE VDLKDKWRNL VGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRFLKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g031490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7357390.0AY735739.1 Arabidopsis thaliana hypothetical protein AT5G58340 mRNA, complete cds.
GenBankAY9248700.0AY924870.1 Arabidopsis thaliana hypothetical protein (At5g58340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483423.10.0PREDICTED: uncharacterized protein LOC104761934 isoform X2
TrEMBLA0A178UH590.0A0A178UH59_ARATH; Uncharacterized protein
STRINGXP_010483420.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein