PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g029680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HRT-like
Protein Properties Length: 451aa    MW: 50559.7 Da    PI: 9.0497
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g029680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like57.81.8e-18247277131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGvile+G +C+r+PvkgRKRC eHKG+R+
  Csa18g029680.1 247 VCGVILENGGFCNRSPVKGRKRCIEHKGQRV 277
                     7*****************************7 PP
2HRT-like54.12.5e-17308338131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGvil d  +C+++Pv+gRKRCe HKGmRi
  Csa18g029680.1 308 TCGVILPDMEPCNKSPVPGRKRCEDHKGMRI 338
                     7*****************************7 PP
3HRT-like25.81.8e-08377403228
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                     C +++++G +C+r+   g KRC++HK 
  Csa18g029680.1 377 CEATTKNGLPCTRSSPIGSKRCWQHKE 403
                     99************************7 PP
4HRT-like56.16.2e-18420449231
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     CGv+l +G +C+r+PvkgRKRCeeHKGmRi
  Csa18g029680.1 420 CGVKLCNGLICERSPVKGRKRCEEHKGMRI 449
                     *****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVLIGSNDWE DFNNGKDGVG RYRVQNLPRK SFPGLYELGV AVIGQDQGRK LEPDDVLAAY  60
LGQAESVRTR LQRYGRSGAH LRNVYNLVDC ETVESSPVKK AVTGGLFEDI FSKGGSILYR  120
WAPMGSKRVA EATEGMLLST FDYAWNKGSN GERRQLDLLK KLGDLEFMRK RKSGISRMFF  180
PFLRNQVGIR IKGEKHVLKE ERKLSCDVVD EEKSSNFLTS ILKLTRSRPQ PVSDRFDEID  240
GSCTDSVCGV ILENGGFCNR SPVKGRKRCI EHKGQRVCRV SPVKQSPPPN PEIFTGQDHH  300
NHNDSDVTCG VILPDMEPCN KSPVPGRKRC EDHKGMRINA FLFLLNETDR EKTVKDEKSD  360
PESHKEISNE EGSPRFCEAT TKNGLPCTRS SPIGSKRCWQ HKEKISPVCF QPEAAKIVAC  420
GVKLCNGLIC ERSPVKGRKR CEEHKGMRIT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172MRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g029680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133920.0AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483159.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A178UQQ20.0A0A178UQQ2_ARATH; ET2
STRINGXP_010483159.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2