PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g029530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 405aa    MW: 45472.7 Da    PI: 7.706
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g029530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.21.4e-35431941128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                     lp+G++F+Ptd+el+ e+L++kv+gk         +           +i+   +i++++P++Lp  v+ +  + +fF+k +++y+tg+rk+r+  
  Csa18g029530.1  43 LPAGVKFDPTDQELI-EHLEAKVKGKGknekwsssH---PlidefipTIDGEdGICYTHPQKLP-GVTRDGLSKHFFHKPSRAYTTGTRKRRKii 132
                     799************.99*******99655555541...055554433655545**********.555666799******************889 PP

             NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                ++ +W++tgk+++v++ +g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Csa18g029530.1 133 qtdhdseltgSSETRWHKTGKTRPVMT-NGQQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194
                     999999997766889************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3835213IPR003441NAC domain
PROSITE profilePS5100531.76843213IPR003441NAC domain
PfamPF023659.0E-1644194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MKNSKFNLID SKLEEHHHLC GSKHCPGCGR MIQAATKPNW VGLPAGVKFD PTDQELIEHL  60
EAKVKGKGKN EKWSSSHPLI DEFIPTIDGE DGICYTHPQK LPGVTRDGLS KHFFHKPSRA  120
YTTGTRKRRK IIQTDHDSEL TGSSETRWHK TGKTRPVMTN GQQRGCKKIL VLYTNFGKNR  180
RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV SNIHWSDHHG SKEVTGIGVG  240
DEISGVAAAL QSLGSGDVVS RVRTNPYTRG FDEGTAEASK GRENQRMSGT CEEVHDGIIR  300
PSTTSSMSSH HMIHDHNQYH QIGDRRGFNI SSYPMTPTIT SQHESTFNVT STMPFQQQQL  360
RGRSSGSELE DLIMGCTTAT CTEDEHSEAN PPQNAEWLTF PPYW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g029530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133921e-180AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026881e-180CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483136.10.0PREDICTED: NAC domain-containing protein 10-like isoform X1
SwissprotQ9M0F81e-113NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1P8B9R10.0A0A1P8B9R1_ARATH; NAC domain containing protein 99
STRINGXP_010483136.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149281720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.10.0NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]