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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa18g029530.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
NAC |
Protein Properties |
Length: 405aa MW: 45472.7 Da PI: 7.706 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa18g029530.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 114.2 | 1.4e-35 | 43 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77
lp+G++F+Ptd+el+ e+L++kv+gk + +i+ +i++++P++Lp v+ + + +fF+k +++y+tg+rk+r+
Csa18g029530.1 43 LPAGVKFDPTDQELI-EHLEAKVKGKGknekwsssH---PlidefipTIDGEdGICYTHPQKLP-GVTRDGLSKHFFHKPSRAYTTGTRKRRKii 132
799************.99*******99655555541...055554433655545**********.555666799******************889 PP
NAM 78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
++ +W++tgk+++v++ +g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l
Csa18g029530.1 133 qtdhdseltgSSETRWHKTGKTRPVMT-NGQQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194
999999997766889************.999***********5547999999*********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MKNSKFNLID SKLEEHHHLC GSKHCPGCGR MIQAATKPNW VGLPAGVKFD PTDQELIEHL 60 EAKVKGKGKN EKWSSSHPLI DEFIPTIDGE DGICYTHPQK LPGVTRDGLS KHFFHKPSRA 120 YTTGTRKRRK IIQTDHDSEL TGSSETRWHK TGKTRPVMTN GQQRGCKKIL VLYTNFGKNR 180 RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV SNIHWSDHHG SKEVTGIGVG 240 DEISGVAAAL QSLGSGDVVS RVRTNPYTRG FDEGTAEASK GRENQRMSGT CEEVHDGIIR 300 PSTTSSMSSH HMIHDHNQYH QIGDRRGFNI SSYPMTPTIT SQHESTFNVT STMPFQQQQL 360 RGRSSGSELE DLIMGCTTAT CTEDEHSEAN PPQNAEWLTF PPYW*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB013392 | 1e-180 | AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19. |
GenBank | CP002688 | 1e-180 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |