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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g026340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 621aa MW: 69392.7 Da PI: 8.3347 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ede+l+ +v++ G g+W+++ + g+ R++k+c++rw ++l Csa18g026340.1 30 KGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 77 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1.1e-14 | 83 | 126 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T +E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++ Csa18g026340.1 83 KGSFTGDEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 126 789*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.98 | 25 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.64E-28 | 29 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.21E-10 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 24.132 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 83 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 85 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-10 | 85 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MIMYGGGGGG AGKDGGSTNH ISDGGVVLKK GPWTAAEDEI LAAYVRENGE GNWNAVQKNT 60 GLARCGKSCR LRWANHLRPN LKKGSFTGDE ERLIIQLHAQ LGNKWARMAA QLPGRTDNEI 120 KNYWNTRLKR LHRQGLPLYP PDIIPNHQLH PHPHHQQQQH HHQQQQQHNH HHQQMYFQPQ 180 SSQPNTPSSS PLPSPTPLNA NANSPSSFTF HTPTANLLHP LSPHTPNRPQ TPSQLCSTPP 240 PPLLSSPLSS PRNNQYPTLP LFALQHSQTN NNDTNFTFPR PPPLLQPPSS LLAKRYKNAN 300 TPLNCINRVS TAPFSPVSRE SYTSFLTLPY PSPTSQTATY HNTNNNYSSS PSFSLNPSSS 360 YPTTTSSPSY LHSHYTPSST SFHTSPVYSM KQEQLPSNQI PQIDAYNNIN NFTDNERQNH 420 NLNSSGVHRR SSSCSLLEDV LEEAEVLAAE GRDRPSKRRQ LTASPPNHNN NNNNDNNNSD 480 NFFSVSFGHY DSSDNLCSLQ DLKRQEDESL QMNTMQEDIA KLLDWGSDSG EISNGQSSVV 540 TDENLVLDVH QFASLFPADS TAVGNQRCSV VMFLGLLGRL VKMILMIGCC KEEEDKLKKR 600 DEEYKRKKRD EEDKRKQKYG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-28 | 27 | 130 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 3e-28 | 27 | 130 | 1 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 594 | 599 | DKLKKR |
2 | 595 | 607 | KLKKRDEEYKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g026340.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC544014 | 0.0 | KC544014.1 Arabidopsis thaliana transcription factor MYB120 (MYB120) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019095638.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
Swissprot | Q94FL7 | 0.0 | MY120_ARATH; Transcription factor MYB120 | ||||
TrEMBL | R0GJN2 | 0.0 | R0GJN2_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.1629s0073.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9939 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55020.1 | 1e-168 | myb domain protein 120 |
Publications ? help Back to Top | |||
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