PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g023620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 342aa MW: 37127.4 Da PI: 9.4502 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.3 | 3e-12 | 81 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Csa18g023620.1 81 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 125 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.28E-16 | 75 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.758 | 76 | 130 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.6E-18 | 79 | 128 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.8E-6 | 79 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-10 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-10 | 81 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-7 | 83 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MVSRNQNPSD GYFLDPTGMT TVPPGLGPSF TAAVSSSSSS SPTTSSSTAV AVAADAAATV 60 SSSSEDLSKK IRKPYTITKS RESWTEPEHD KFLEALQLFD RDWKKIEAFI GSKTVIQIRS 120 HAQKYFLKVQ KSGTGEHLPP PRPKRKAAHP YPQKAHKSVQ PQLPGSFKST SEPNDPSFMF 180 RPESSSMLMT SPTTAAAAPW TNNAQTISFT PLTKAGAGAN NNCSSSSENT PRPRSNRDTS 240 DQGNVGHSLR VLPDFAQVYS FIGSVFDPYA SNHLQKLKKM DPIDVETVLL LMRNLSINLS 300 SPDFEDHRRL LSSYDISSET ATDHHGGVNK TLIKDPPEIS T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00560 | DAP | Transfer from AT5G52660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g023620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY550303 | 0.0 | AY550303.1 Arabidopsis thaliana MYB transcription factor (At5g52660) mRNA, complete cds. | |||
GenBank | BT002002 | 0.0 | BT002002.1 Arabidopsis thaliana putative protein (At5g52660) mRNA, complete cds. | |||
GenBank | BT025882 | 0.0 | BT025882.1 Arabidopsis thaliana At5g52660 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482638.1 | 0.0 | PREDICTED: protein REVEILLE 6-like isoform X1 | ||||
Swissprot | Q8H0W3 | 0.0 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | R0GMQ9 | 0.0 | R0GMQ9_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010482638.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 1e-165 | MYB_related family protein |
Publications ? help Back to Top | |||
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