 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa18g022740.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 227aa MW: 26096.2 Da PI: 10.0706 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa18g022740.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 88.3 | 4.1e-28 | 13 | 63 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRr g++KKA+ELSvLCda+va ++fs++g+lyeyss
Csa18g022740.1 13 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAALVFSQSGRLYEYSS 63
68***********************************************96 PP
|
| 2 | K-box | 68 | 3e-23 | 89 | 175 | 11 | 97 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
e+ ++l++e++++ k+i+ L+ +R+l+G++L+s+s+ eLq++ q+eksl+ +Rs+K el+ q+e+l++ke+el +e k+Lr++
Csa18g022740.1 89 ERYLQELKKEIDRMVKKIDLLEVHHRKLMGQGLGSCSVAELQEIDIQIEKSLRIVRSRKAELYAGQLEKLKEKERELLNERKRLREE 175
667899******************************************************************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MAGKMGRGKI EIKKIENVTS RQVTFSKRRS GLFKKAHELS VLCDAQVAAL VFSQSGRLYE 60
YSSSEMEKII ERYGKFSNDS FVAERPQVER YLQELKKEID RMVKKIDLLE VHHRKLMGQG 120
LGSCSVAELQ EIDIQIEKSL RIVRSRKAEL YAGQLEKLKE KERELLNERK RLREEQLRER 180
LMRPVVPLTL QICDKGKSTE DGGRTKHSST SDVETDLFIG LPVTRQ*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY141220 | 0.0 | AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds. |
