PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa18g022640.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 198aa MW: 22921.3 Da PI: 8.9865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g022640.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	27	78	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h e Er+RR+++ + ++ Lr+llP + ++K s ++ + +Av+YIk+Lq Csa18g022640.1 27 KMMHRETERQRRQEMATLYASLRSLLPLHF--IKGKRSTSDQVNEAVNYIKYLQ 78 789***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-14	23	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.297	25	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-11	27	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-11	27	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.72E-10	27	82	No hit	No description
SMART	SM00353	5.1E-7	31	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MDDCRDKRRR RCTKLTCSKD NNNDMEKMMH RETERQRRQE MATLYASLRS LLPLHFIKGK 60 RSTSDQVNEA VNYIKYLQRK TEELSLRRDE LMLLSRGSFV GSSNDDSKEE MEMMSRKNHV 120 VVRQCLVGVE IVFSSGCRSG QPRFSNVLQV LSENGLYLLN SFSSIVDDRL IYTIQAEVND 180 ITLVDLAALE SRLIRMK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g022640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT010952	1e-179	BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010482521.1	1e-142	PREDICTED: transcription factor bHLH36-like
Swissprot	Q9FLI1	1e-98	BH036_ARATH; Transcription factor bHLH36
TrEMBL	R0GSA5	1e-117	R0GSA5_9BRAS; Uncharacterized protein
STRING	XP_010482521.1	1e-142	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	1e-101	bHLH family protein