PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g022000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 396aa    MW: 44180.7 Da    PI: 8.1346
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g022000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2224e-0777100226
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng 26 
                     +y+GVr++  +g+++AeIrdps+ g
  Csa18g022000.1  77 HYRGVRRRL-WGKYAAEIRDPSKKG 100
                     7*****877.**********98744 PP
2AP256.47.6e-18237287255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAa+ +++a+ kl+g
  Csa18g022000.1 237 HYRGVRRRP-WGKFAAEIRDP---NkKGVRVWLGTFDTAMEAARGYDKAAFKLRG 287
                     7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-976108IPR001471AP2/ERF domain
PROSITE profilePS510329.87577138IPR001471AP2/ERF domain
SMARTSM003800.03577129IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-577107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-31236296IPR001471AP2/ERF domain
PROSITE profilePS5103224.381237295IPR001471AP2/ERF domain
CDDcd000181.54E-30237295No hitNo description
SMARTSM003804.1E-36237301IPR001471AP2/ERF domain
PfamPF008475.5E-12237287IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-22237296IPR016177DNA-binding domain
PRINTSPR003671.1E-9238249IPR001471AP2/ERF domain
PRINTSPR003671.1E-9261277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MASSHQQQQQ QQLEQHQSGL DLITQHLLTD FPSLETFVST IYHSTTSSTL SQRKPPLATI  60
AVPTTAPVAQ EEEEQRHYRG VRRRLWGKYA AEIRDPSKKG DESHLSSHKA VKREEVQAQA  120
DACPLTPSSW MGFWDKADSK EMGIFSVPPL SPYPSLGYSS LVKETPTSSM ASTHQQQDQS  180
ALDLIAQHLL TDFPSLENFV SNIHHSTTSS LSQRKPPLAT IAVPTTAPVA QGDDQRHYRG  240
VRRRPWGKFA AEIRDPNKKG VRVWLGTFDT AMEAARGYDK AAFKLRGSKA ILNFPLEAGK  300
YKDLEDNNNN NKTVFLKAKR KRQVMEDESH GSNLCIHKAV KREEAEVQAQ AEACPLTPSS  360
WMGFWDGEDS KEMTIFTVPP LSPYPSLGYP QLVLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-28236296161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g022000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482454.11e-169PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY901e-121EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLK4FQC51e-126K4FQC5_ARAHA; Uncharacterized protein
STRINGXP_010482454.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-92ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]