PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g022000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 396aa MW: 44180.7 Da PI: 8.1346 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22 | 4e-07 | 77 | 100 | 2 | 26 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng 26 +y+GVr++ +g+++AeIrdps+ g Csa18g022000.1 77 HYRGVRRRL-WGKYAAEIRDPSKKG 100 7*****877.**********98744 PP | |||||||
2 | AP2 | 56.4 | 7.6e-18 | 237 | 287 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+ta eAa+ +++a+ kl+g Csa18g022000.1 237 HYRGVRRRP-WGKFAAEIRDP---NkKGVRVWLGTFDTAMEAARGYDKAAFKLRG 287 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-9 | 76 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.875 | 77 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.035 | 77 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-5 | 77 | 107 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 236 | 296 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.381 | 237 | 295 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.54E-30 | 237 | 295 | No hit | No description |
SMART | SM00380 | 4.1E-36 | 237 | 301 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-12 | 237 | 287 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-22 | 237 | 296 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-9 | 238 | 249 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 261 | 277 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MASSHQQQQQ QQLEQHQSGL DLITQHLLTD FPSLETFVST IYHSTTSSTL SQRKPPLATI 60 AVPTTAPVAQ EEEEQRHYRG VRRRLWGKYA AEIRDPSKKG DESHLSSHKA VKREEVQAQA 120 DACPLTPSSW MGFWDKADSK EMGIFSVPPL SPYPSLGYSS LVKETPTSSM ASTHQQQDQS 180 ALDLIAQHLL TDFPSLENFV SNIHHSTTSS LSQRKPPLAT IAVPTTAPVA QGDDQRHYRG 240 VRRRPWGKFA AEIRDPNKKG VRVWLGTFDT AMEAARGYDK AAFKLRGSKA ILNFPLEAGK 300 YKDLEDNNNN NKTVFLKAKR KRQVMEDESH GSNLCIHKAV KREEAEVQAQ AEACPLTPSS 360 WMGFWDGEDS KEMTIFTVPP LSPYPSLGYP QLVLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-28 | 236 | 296 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g022000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482454.1 | 1e-169 | PREDICTED: ethylene-responsive transcription factor ERF105-like | ||||
Swissprot | Q8VY90 | 1e-121 | EF105_ARATH; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | K4FQC5 | 1e-126 | K4FQC5_ARAHA; Uncharacterized protein | ||||
STRING | XP_010482454.1 | 1e-169 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7893 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-92 | ERF family protein |
Publications ? help Back to Top | |||
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