PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g008090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 1313aa    MW: 148512 Da    PI: 6.1406
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g008090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.4e-2712041264259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                      +D+++WrKYGqKe+ gs+fpr Y+rCt++   gC ++k+vers++dp++++itY +eHn++
  Csa18g008090.1 1204 EDEWSWRKYGQKEILGSRFPRIYFRCTHKytqGCLATKQVERSSTDPDMFIITYVSEHNCN 1264
                      8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522002.35E-515103IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525402.01E-51134392IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009316.8E-27164402IPR002182NB-ARC
SMARTSM003829.3E-4167297IPR003593AAA+ ATPase domain
Gene3DG3DSA:3.40.50.3001.0E-11168286IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.6E-22170185No hitNo description
CDDcd000090.00399173279No hitNo description
PRINTSPR003641.6E-22238252No hitNo description
PRINTSPR003641.6E-22332346No hitNo description
SuperFamilySSF467855.17E-12369470IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.80.10.102.0E-11501699IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.36E-33504854IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077251.5E-9572591IPR011713Leucine-rich repeat 3
Gene3DG3DSA:3.80.10.107.2E-15700856IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.6E-22741757No hitNo description
Gene3DG3DSA:2.20.25.801.6E-2611921264IPR003657WRKY domain
SuperFamilySSF1182902.48E-2411981265IPR003657WRKY domain
PROSITE profilePS5081124.5711981266IPR003657WRKY domain
SMARTSM007741.2E-3712031265IPR003657WRKY domain
PfamPF031062.4E-2312041263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0008219Biological Processcell death
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1313 aa     Download sequence    Send to blast
MTNCENAEGF VCISCVDEVR LSFASHLSEA LRRKGINNVV IDVDSDDLCK ESQEKVEKSR  60
VSVMVLPGNC DYSEVWLDKF AKVLRKNKEQ VVVPVLYGDN QLRGEWLSAL DLRGVSPIHK  120
SRKECSDSTL VEEIVRDVYE KLFSMERIGI YPKLLEIEKM VNKQPFGIRC VGIWGMPGIG  180
KTTLAKAVFH QMFGAFDASC FIEDSDKSVH EKGLYCLLEE QLLKDKRTVM ELSSLRDRLN  240
NKRVLVVLDD VHNALVAESF LEDFDWLGPE SLIIITSRDK QVFHLCRINQ IYEVQGLNER  300
EALQLFLMCA SLKDMGEEKN LHELFVKVIN YANGNPLAIS VYGRELKGKK KLSEMETAFL  360
KLKRRPPFKI VDAFKSSYDT LSDDEKNIFL DIACFFQGEN VNYVIQLLEG CGFFPHVGID  420
VLVEKCLVTI SENRVRLHNL TQDIGREIIN GETVQIERRT RLWEPWSIKY LLEYNEQKGI  480
GEPKATFKRA QGSEEIEGMF LDTSNLRFHV QPSAFKNMLN LRLLKIYCSN PEVHPVINFP  540
KGFFLSLPNE LRLLHWENYP LRSLPQSFDP RHLVEINMPY SQLEKLWGGT KNLEMLKTIR  600
LCHSQNLVNI DDLVKAQNLE VIDIQGCTRL QSFPAAGQLL HLGVVNLSGC IHIKNVLEIP  660
PNIETLNLEG TGILALPLST VKPNHRELVN FLTEIPDLSE ASKLERLTSL LESRSSSQDL  720
GKLICLELKD CSCLQSLPNM ANLDLLNVLD LSGCSMLNSI QGFPRFLKEL YLAGTAIREV  780
PQLPQSLELF KAHGSCLRSL PNMASLEFLK VLDVSGCSEL ETIHGFPRNL KELDFAGTTL  840
REVPQLPLSL ELLNAHSSDK FPMHYTFSNF FDLSPQVVND FLVKALTNVK HIPREYTQDI  900
NKAPTFSFSA PSHTNQNATL GLQLGSSVMT RLNPSWRNTL VGFGMLVEVA FSEDYCDATG  960
FGISCVCRWS NKEGRSYRKE RNYHCWPPGK VVPKVRKDHT FVFCDVNMRP STGERSDPDI  1020
WADLVVFEFF PINQQTKSLN DRFTVTRCGV RVINFTSGNT SLKNISPVLS LDPMEVSGYG  1080
VVEEALRVSY DDLQEVDKVL FLYIACLFND EDVDLVASLI AGIDLDVISG LKVLADVSLI  1140
SVSSNGEIVM PWLLLKMGKE TLRRHFMLLS DCESSMSENL SDVSKKRRKS NAKKVVCVQA  1200
TNLEDEWSWR KYGQKEILGS RFPRIYFRCT HKYTQGCLAT KQVERSSTDP DMFIITYVSE  1260
HNCNASEPPY GQTDHDWDAT MGTSTNDPAG CKNGSGSISQ FIGEVPDHTA RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_A2e-5381496151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_C2e-5381496151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111841188KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein involved in resistance to fungal and bacterial pathogens, including R.solanacearum, P.syringae pv. tomato and C.higginsianum. In presence of RPS4, elicites an EDS1-dependent hypersensitive response (PubMed:24146667). {ECO:0000250|UniProtKB:Q9FH83, ECO:0000269|PubMed:19519800, ECO:0000269|PubMed:19826224, ECO:0000269|PubMed:24146667, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g008090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4704720.0AB470472.1 Arabidopsis thaliana at5g45260 mRNA for putative disease resistance protein, complete cds, ecotype: RLD-0.
GenBankHQ1706310.0HQ170631.1 Arabidopsis thaliana RRS1-R mRNA, complete cds.
GenBankJX1355600.0JX135560.1 UNVERIFIED: Arabidopsis thaliana ecotype Be-0 (Bensheim) resistance to ralstonia solanacearum 1-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481619.10.0PREDICTED: disease resistance protein RRS1-like
SwissprotC4B7M50.0WR52W_ARATH; Disease resistance protein RRS1
TrEMBLL7Z7P40.0L7Z7P4_ARATH; Resistance to ralstonia solanacearum 1 (Fragment)
STRINGXP_010481619.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.10.0Disease resistance protein (TIR-NBS-LRR class)
Publications ? help Back to Top
  1. Zhang ZM, et al.
    Mechanism of host substrate acetylation by a YopJ family effector.
    Nat Plants, 2017. 3: p. 17115
    [PMID:28737762]