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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa18g003200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
bHLH |
| Protein Properties |
Length: 475aa MW: 53717.5 Da PI: 5.6951 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa18g003200.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 38.5 | 2.1e-12 | 307 | 352 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er RR+++N++f Lr ++P+ K++K + Le Av+YI++L
Csa18g003200.1 307 NHVEAERMRREKLNHRFYALRAVVPNV-----SKMDKTSLLEDAVRYINEL 352
799***********************6.....5***************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 475 aa
Download sequence Send
to blast |
MNTDDNLSMI EALLTSDLWP PLPPANHHLS LETTLQKRLH TVLSGTHEPW TYAIFWKPSY 60
FDLSGESVLK WSDGVYNGDD EEKTGRRLRR TIKKTIPSSP EEKERRRRVL RELNSMISGE 120
TFPVVEEDDA KDDVDDVEVT DTEWFFLVSM TWTFGNGSGL AGKAFTTYNP VWVTGSDQIY 180
GSGCDRAKQG GGLGLQTIVC IPSDNGVLEL GSTEQIRQNS DLFNKIRFLF SFEGSKDFSG 240
APTSAQFHSS IHNPNPNPVY QPIQINFSGE EFKRSSDDRM DEMEIPEMKP GKKRGRKPMH 300
GREKPLNHVE AERMRREKLN HRFYALRAVV PNVSKMDKTS LLEDAVRYIN ELKSTAENAE 360
SERNAVQNQL NELKKITGRQ NATSSVCNDD KENLSELKIE VKAMGSDVMI RVESGKRNHP 420
GARLMNALMD LELEVSHASI SVMNDLMIQQ ATVKMGLRIY EQEQLQDMLI SKIN*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 8e-49 | 32 | 232 | 6 | 194 | Transcription factor MYC3 |
| 4rqw_B | 8e-49 | 32 | 232 | 6 | 194 | Transcription factor MYC3 |
| 4rs9_A | 8e-49 | 32 | 232 | 6 | 194 | Transcription factor MYC3 |
| 4yz6_A | 8e-49 | 32 | 232 | 6 | 194 | Transcription factor MYC3 |
| Search in ModeBase |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Chen X,Huang H,Qi T,Liu B,Song S
New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
Plant Signal Behav, 2016. 11(2): p. e1135280
[PMID:26829586] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Song S, et al.
MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
Plant Cell Physiol., 2017. 58(10): p. 1752-1763
[PMID:29017003] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786]
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