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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa17g094960.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
M-type_MADS |
Protein Properties |
Length: 514aa MW: 58860.8 Da PI: 7.6892 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa17g094960.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 66.7 | 2.3e-21 | 7 | 57 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+++++s ++++s+R+ +i+ KAe LSvLC+++v+vi+++++g l+++++
Csa17g094960.1 7 KSSSSYSLTSTSLSNRLLTIFRKAEQLSVLCQIDVCVIYYGPEGDLKTFPN 57
789**********************************************95 PP
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2 | SRF-TF | 33.2 | 6.6e-11 | 205 | 229 | 27 | 51 |
HHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 27 LSvLCdaevaviifsstgklyeyss 51
LSvLC+++v+vi+++++g l+++++
Csa17g094960.1 205 LSVLCQIDVCVIYYGPEGDLKTFPN 229
9**********************95 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 514 aa
Download sequence Send
to blast |
MRPSSSKSSS SYSLTSTSLS NRLLTIFRKA EQLSVLCQID VCVIYYGPEG DLKTFPNEKE 60 KVRNMAMRYS RLNESLRSKK RTHLSEFLEE NPNKRMKTSP SPEKKNVDVL KYPISDHYSP 120 DQISQLIQSL ELNLSTSQQR LRFLLESHDK RKLLDHHHQS LASSSSQNHQ TQSLNPSQQF 180 SLLVYNHGDN TFSQIPVSAS NLKQLSVLCQ IDVCVIYYGP EGDLKTFPNE KEKVRNMAMR 240 YSRLNESLRS KKRTHLSEFL EENPNKRMKT SPSPEKKNVD VLKYPISDHY SPDQISQLIQ 300 SLELNLSTSQ QRLRFLLESH DKRKLLDHHH QSLASSSSQN HQTQSLNPSQ QFSLLVYNHG 360 DNTFSQIPVS ASNLSQDLSA LLQESHLKNQ LMKQELSDYD QNICMSDITN NSFQHPCVSE 420 TDHYSGVQES VNNFGMQKEF YGYDKNMSSM GNINSSSFQH PCVSNTEVVQ ESMNNYGMNQ 480 LMQKQFYGCD QNMSSMGNSG LMQHEVYGYD QNL*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |