PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g093530.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 392aa MW: 42913.8 Da PI: 7.0804

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g093530.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.2	9.9e-37	36	147	2	115
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l+++ ++ + ++a +++ ++++++++k s ++ Csa17g093530.1 36 TGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAEL--PPWNPADALRQHAANAKPRKTKTLVSPPP 128 79**************************************************************..33322322233333333333333333333 PP TCP 97 skksqksaasalnlakesr 115 +++++++++++ + +++++ Csa17g093530.1 129 PQPPPQHHQETEHHHHHHQ 147 3333333332222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-33	36	147	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.272	38	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MRHSQQSAFT ASPTENDGGG CGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA 60 PTAIQFYDVQ DRLGFDRPSK AVDWLIKKAK SAIDDLAELP PWNPADALRQ HAANAKPRKT 120 KTLVSPPPPQ PPPQHHQETE HHHHHHQIGE EDNESSFLPA SMDSDSIADT IKSFFPVASS 180 QQSYHHHQPP SRANTQNQDL LRLSLQSFQN GPPFTDQTEP VLFSSQSNHP LGFDSSTASW 240 EQSHQSPEFG KIQRLVTWNN GGAADSPEST GGGGGGGGGY VFASPSPVFS QSQLLSQRGP 300 LQSINNTPMI RAWFDPHHHH HHQSMTTDDL HHHHHHYHVP TGIHQSAIPG IAFASSGEFS 360 GFRIPARFHG EQEEAHGGDN KPSSASSDSR H*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MRHSQQSAFT ASPTENDGGG CGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
PTAIQFYDVQ DRLGFDRPSK AVDWLIKKAK SAIDDLAELP PWNPADALRQ HAANAKPRKT  120
KTLVSPPPPQ PPPQHHQETE HHHHHHQIGE EDNESSFLPA SMDSDSIADT IKSFFPVASS  180
QQSYHHHQPP SRANTQNQDL LRLSLQSFQN GPPFTDQTEP VLFSSQSNHP LGFDSSTASW  240
EQSHQSPEFG KIQRLVTWNN GGAADSPEST GGGGGGGGGY VFASPSPVFS QSQLLSQRGP  300
LQSINNTPMI RAWFDPHHHH HHQSMTTDDL HHHHHHYHVP TGIHQSAIPG IAFASSGEFS  360
GFRIPARFHG EQEEAHGGDN KPSSASSDSR H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-20	43	96	1	54	Putative transcription factor PCF6
5zkt_B	4e-20	43	96	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g093530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC008007	1e-140	AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence.
GenBank	AF072134	1e-140	AF072134.1 Arabidopsis thaliana TCP3 mRNA, complete cds.
GenBank	AK118615	1e-140	AK118615.1 Arabidopsis thaliana mRNA, clone: RAFL19-87-O22.
GenBank	AY099678	1e-140	AY099678.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds.
GenBank	BT000266	1e-140	BT000266.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds.
GenBank	CP002684	1e-140	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010479875.1	0.0	PREDICTED: transcription factor TCP3-like
Swissprot	Q9MAH8	0.0	TCP3_ARATH; Transcription factor TCP3
TrEMBL	D7KKF4	0.0	D7KKF4_ARALL; Uncharacterized protein
STRING	XP_010479875.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2408	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	0.0	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]