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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Csa17g093530.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
TCP |
| Protein Properties |
Length: 392aa MW: 42913.8 Da PI: 7.0804 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa17g093530.1 | genome | CSGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 118.2 | 9.9e-37 | 36 | 147 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96
+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l+++ ++ + ++a +++ ++++++++k s ++
Csa17g093530.1 36 TGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAEL--PPWNPADALRQHAANAKPRKTKTLVSPPP 128
79**************************************************************..33322322233333333333333333333 PP
TCP 97 skksqksaasalnlakesr 115
+++++++++++ + +++++
Csa17g093530.1 129 PQPPPQHHQETEHHHHHHQ 147
3333333332222222222 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MRHSQQSAFT ASPTENDGGG CGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA 60
PTAIQFYDVQ DRLGFDRPSK AVDWLIKKAK SAIDDLAELP PWNPADALRQ HAANAKPRKT 120
KTLVSPPPPQ PPPQHHQETE HHHHHHQIGE EDNESSFLPA SMDSDSIADT IKSFFPVASS 180
QQSYHHHQPP SRANTQNQDL LRLSLQSFQN GPPFTDQTEP VLFSSQSNHP LGFDSSTASW 240
EQSHQSPEFG KIQRLVTWNN GGAADSPEST GGGGGGGGGY VFASPSPVFS QSQLLSQRGP 300
LQSINNTPMI RAWFDPHHHH HHQSMTTDDL HHHHHHYHVP TGIHQSAIPG IAFASSGEFS 360
GFRIPARFHG EQEEAHGGDN KPSSASSDSR H*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC008007 | 1e-140 | AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence. |
| GenBank | AF072134 | 1e-140 | AF072134.1 Arabidopsis thaliana TCP3 mRNA, complete cds. |
| GenBank | AK118615 | 1e-140 | AK118615.1 Arabidopsis thaliana mRNA, clone: RAFL19-87-O22. |
| GenBank | AY099678 | 1e-140 | AY099678.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds. |
| GenBank | BT000266 | 1e-140 | BT000266.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds. |
| GenBank | CP002684 | 1e-140 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G53230.1 | 0.0 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
| Publications
? help Back to Top |
- Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Mazur MJ, et al.
Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
Front Plant Sci, 2017. 8: p. 2043
[PMID:29250092]
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