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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa17g093060.2 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
NAC |
| Protein Properties |
Length: 267aa MW: 29446.5 Da PI: 10.1614 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa17g093060.2 | genome | CSGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.9 | 8.4e-53 | 53 | 184 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeelv +yLk+k+++ +l++ +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+
Csa17g093060.2 53 LPPGFRFHPTDEELVIHYLKRKADSVPLPV-AIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIST 146
79****************************.88***************999999****************************************9 PP
NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl
Csa17g093060.2 147 gggggGNKKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 184
999988889***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MHFILLTPTL SQVSTISHYL SKKKKKKKES LRSSNQMEST DSSGGPPPPQ PNLPPGFRFH 60
PTDEELVIHY LKRKADSVPL PVAIIADVDL YKFDPWELPA KASFGEQEWY FFSPRDRKYP 120
NGARPNRAAT SGYWKATGTD KPVISTGGGG GGNKKVGVKK ALVFYSGKPP KGVKSDWIMH 180
EYRLTDNKPN HICDFGNKKN SLREQFFPPV MMMSSLNQDS GIGSSSSPSK RFNGGDCSNI 240
VSSMAATPLM QNQGGIYQLP GLNWYS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | May encode a transcription factor involved in the elaboration of shoot apical meristems (SAM) (Probable). Together with NAC056/NARS1, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF123311 | 0.0 | AF123311.1 Arabidopsis thaliana NAC domain protein NAM mRNA, complete cds. |
| GenBank | AY086093 | 0.0 | AY086093.1 Arabidopsis thaliana clone 21243 mRNA, complete sequence. |
| GenBank | AY099786 | 0.0 | AY099786.1 Arabidopsis thaliana NAM-like protein (At1g52880) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Wang YX
Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
Mol. Biol. Rep., 2013. 40(11): p. 6451-8
[PMID:24057250] - Raherison ES,Giguère I,Caron S,Lamara M,MacKay JJ
Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures.
New Phytol., 2015. 207(1): p. 172-87
[PMID:25728802] - Du Q,Wang H
The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
Plant Signal Behav, 2015. 10(10): p. e1078955
[PMID:26340415] - Vialette-Guiraud AC, et al.
A Conserved Role for the NAM/miR164 Developmental Module Reveals a Common Mechanism Underlying Carpel Margin Fusion in Monocarpous and Syncarpous Eurosids.
Front Plant Sci, 2015. 6: p. 1239
[PMID:26793217]
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