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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g092510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 711aa MW: 81737.9 Da PI: 6.9967 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.9 | 5.9e-22 | 104 | 187 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v+++ l+HnH l Csa17g092510.1 104 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVIEVTLDHNHLL 187 69*****************************************9988.....999********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-19 | 104 | 187 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.1E-24 | 305 | 397 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.606 | 592 | 628 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-4 | 600 | 624 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 603 | 630 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MERSESVDED VQASEYLQND EILERDDPMS DGGCTLRIGD DDEALVCSSD HEIDVGFCQN 60 QDRRSEDDAA TGEFDEQSGL LVEGKEFEAP AVGMEFDSYD DAYNYYNCYA TEVGFRVRVK 120 NSWFKRRSKE KYGAVLCCSS QGFKRINDVN RVRKETRTGC PAMIRMRQVD SKRWRVIEVT 180 LDHNHLLGSK LCKSVKRNGT KRKCVSSPVS DAKTVKLYRT RVMDTVDNVN PSLTLKKQFQ 240 NSAGSPDVLN LKKGDSAAIY NYFCRMQLTN PTFFYLMDVN DEGQLRNVFW ADAFSKVSCS 300 YFGDVIFIDN SYISGKFEVP LVTFTGVNHH GKTTLLSCGL LAGEKMESYH WLLKVWLSVM 360 KCSPQTIVTD RCKPLEAAIS QVFPGSHHRF SLTHIMRKIP EKLGGLHNYD GVRKALTKAV 420 YETLKVVEFE AAWGFLVHNF GIVDNEWLRS LYEERVKWAP VYLKDTFFAG IAAAHPGETL 480 NPFFERYVHK QTPLKEFLDK YELALQKKHK EETLSDMESL NSNTAELKTK CSFESQLSRI 540 YTRNMFKKFQ VEVEEMYSCF STTPLHVDGP LLIFLVKERV VGESNRREIR DFEVLYNRSV 600 GEVRCICSCF NFYGYLCRHA LCVLNFNGVE EIPLRYILPR WRKDYKRIHF AGNALTGFVE 660 GTDRVQWFDQ LYKNALQVVE EGSVSLDHYK VAMQALQQSL DKVHSVEYKQ * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g092510.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080775 | 0.0 | AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds. | |||
GenBank | AY133776 | 0.0 | AY133776.1 Arabidopsis thaliana clone U10495 unknown protein (At1g52520) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479760.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6-like | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | R0IMD0 | 0.0 | R0IMD0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010479760.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10788 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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