PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g088380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 425aa    MW: 46927.1 Da    PI: 10.5721
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g088380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-193079255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr ++ +gr++AeIrd ++    + r++lg+f++aeeAa+a++ a+++l+g
  Csa17g088380.1 30 RFRGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDSAEEAARAYDSAARNLRG 79
                    69*******.**********883....5*************************99 PP
2AP262.41e-19224273255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr ++ +gr++AeIrd ++    + r++lg+f++aeeAa+a++ a+++l+g
  Csa17g088380.1 224 RFRGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDSAEEAARAYDSAARNLRG 273
                     69*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.31E-292989No hitNo description
PROSITE profilePS5103223.3413087IPR001471AP2/ERF domain
SMARTSM003808.4E-373093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-313087IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-213088IPR016177DNA-binding domain
PfamPF008479.4E-133079IPR001471AP2/ERF domain
PRINTSPR003675.6E-103142IPR001471AP2/ERF domain
PRINTSPR003675.6E-105369IPR001471AP2/ERF domain
CDDcd000183.31E-29223283No hitNo description
SMARTSM003808.4E-37224287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-31224281IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21224282IPR016177DNA-binding domain
PROSITE profilePS5103223.341224281IPR001471AP2/ERF domain
PfamPF008479.4E-13224273IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MRRGRGSSAV AGPTAVSTVI NGSVKETQQR FRGVRKRPWG RFAAEIRDPW KKSRVWLGTF  60
DSAEEAARAY DSAARNLRGP KAKTNFPIDP SSPSPNLRFT AFPNTVNQNQ NQVDPFMDHR  120
LYPGDNNNNN QQFHPVVNRP TTSSMSSTVE SFSGPRPTAA KPVTTAAKRY PRTPPVILSP  180
STITTSGFFL KSTTMRRGRG SSAVAGPTAV STVINGSVKE TQQRFRGVRK RPWGRFAAEI  240
RDPWKKSRVW LGTFDSAEEA ARAYDSAARN LRGPKAKTNF PIDPSSPSPN LRFTAFPNTV  300
NQNQNQVDPF MDHRLYPGDN NNNNQQFHPV VNRPTTSSMS STVESFSGPR PTAAKPVTTA  360
AKRYPRTPPV VPEDCHSDCD SSSSVIDDDD IASREIERQR NEEDGDGTRA CAVFYFCDDD  420
DILL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-19302811472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g088380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479528.11e-123PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803397e-73ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLR0I4B48e-77R0I4B4_9BRAS; Uncharacterized protein
STRINGXP_010479528.11e-123(Camelina sativa)
STRINGXP_010479529.11e-123(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-46ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]