PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 335aa MW: 37525.4 Da PI: 7.1363

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g083260.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4e-32	193	248	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+ Csa17g083260.1 193 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 248 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.451	190	250	IPR017930	Myb domain
SuperFamily	SSF46689	5.82E-18	191	251	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-28	192	251	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-26	193	248	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-9	195	246	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGSLGDELSL GSICGSRRGI IMNVVAVEEE HVKKLEEEKR KIESSQLELP LSLQLLNDAI 60 LYLKEEKKRC SEMNTQPLLK DFISLDKPMS EEIDMQLLKR DELTREKKFQ QWRANDDHIS 120 NTKTKNKLGV QRNGEKSSML LVPKVETGLG LGLTSSSIRR KGIVASSRGF TSNSMPQLPP 180 QQPAFLQQQA LRKQRRCWTP ELHRRFVDAL QQLGGPGVAT PKQIREHMQE EGLTNDEVKS 240 HLQKYRLHIR KPNSNAEKQS AVVLGFNLWN SSSQEEEETG EGGESSKISN SQSDSPQGPL 300 QLPSTTTTTG GDSSMEDVED AKSESFQMER LRSP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00193	DAP	Transfer from AT1G49560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g083260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221631	0.0	AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010479391.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FX84	0.0	HHO6_ARATH; Transcription factor HHO6
TrEMBL	R0IIC6	0.0	R0IIC6_9BRAS; Uncharacterized protein
STRING	XP_010479391.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13927	18	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	1e-136	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]