PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g080680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 320aa    MW: 35257.5 Da    PI: 9.3341
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g080680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-09855345
                     SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                      W+ eE++ + +a++++  +      +W + a++++  +tl+q+k+++q
   Csa17g080680.1  8 TWSREEEKAFENAIALHCVEeditddQWMKMASMVP-SKTLEQVKNHYQ 55
                     5****************999****************.***********9 PP
2Myb_DNA-binding38.82.2e-12137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   Csa17g080680.1 137 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 181
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.793462IPR017884SANT domain
SMARTSM007171.9E-6560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-5759IPR009057Homeodomain-like
PfamPF002497.7E-7855IPR001005SANT/Myb domain
CDDcd001672.08E-7858No hitNo description
SuperFamilySSF466897.18E-9965IPR009057Homeodomain-like
PROSITE profilePS5129416.873130186IPR017930Myb domain
SuperFamilySSF466897.9E-17132187IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-17134184IPR006447Myb domain, plants
SMARTSM007172.3E-10134184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-11135180IPR009057Homeodomain-like
PfamPF002498.1E-11137181IPR001005SANT/Myb domain
CDDcd001671.18E-9137182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESVVAATWS REEEKAFENA IALHCVEEDI TDDQWMKMAS MVPSKTLEQV KNHYQILLED  60
VKAIENGQVP LPRYHHHRKG LIVDEAAATS PANRDSHSSG SSEKKPNHGT SGISSSNGGG  120
GRSSGSRAEQ ERRKGIPWTE EEHRLFLLGL DKFGKGDWRS ISRNFVISRT PTQVASHAQK  180
YFIRLNSMNR DRRRSSIHDI TTVNNQPPAV TGGQQQQQQQ QVVKHRPAQP QPQPQPQPQP  240
HHPPTMAGLG MYGNAPVGQP IIAPHDHMGS AVGTPVMLPP PMGTHHHHHH HHLGVAPYAV  300
PAYPVPPLPQ PHPAPSTMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-139851184RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g080680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0869060.0AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence.
GenBankAY5195280.0AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds.
GenBankBT0248620.0BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479331.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A178WIG01e-170A0A178WIG0_ARATH; Uncharacterized protein
STRINGXP_010479331.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-141MYB family protein