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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g074300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | E2F/DP | ||||||||
Protein Properties | Length: 398aa MW: 45049.3 Da PI: 6.3645 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.8 | 7.7e-28 | 155 | 220 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf+kl++++e+g+++ln++a+ L +v ++RRiYDi+NVLe+++liek+ kn+irwkg Csa17g074300.1 155 RYDSSLGLLTKKFVKLIQEAEDGTLDLNHCADVL---EV--QKRRIYDITNVLEGIGLIEKTTKNHIRWKG 220 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-29 | 151 | 222 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.83E-18 | 155 | 218 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.4E-34 | 155 | 220 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.5E-25 | 157 | 220 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 2.46E-29 | 231 | 336 | No hit | No description |
CDD | cd14660 | 9.78E-42 | 231 | 337 | No hit | No description |
Pfam | PF16421 | 5.9E-27 | 236 | 334 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MAATSNSGED PTLSYHHHHH RSPFRFELLQ SISSSDPRYS SLTPSSTNRP FSVSESLPQQ 60 SPLIPSHWDD SYSHITQKFK SRKNHRIQLG SIANMSGESI DDKSKVIVKQ ESPQYVKRVY 120 NKSKGTTTQS KAGKRMANGG EAQNGVLSVP SNNCRYDSSL GLLTKKFVKL IQEAEDGTLD 180 LNHCADVLEV QKRRIYDITN VLEGIGLIEK TTKNHIRWKG ADNLGQKDLG DQISRLKSEV 240 ESMQSEESRL DELIRERQEA LRSLEEDEYC KRYMFMTEED ITSLPRFQNQ TLLAIKAPTA 300 SYIEVPDPDE MRFPQRQYRM VIRSRMGPID VYLLSKYKGD SGETSDKLGQ ESDQKAPFGV 360 DTPSLKIVTS DTDLKADYWF ESDAEVSLTD LWSNFSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 2e-25 | 150 | 221 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:19662336}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00190 | DAP | Transfer from AT1G47870 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g074300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:18424613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF242581 | 0.0 | AF242581.1 Arabidopsis thaliana E2F transcription factor-2 E2F2 mRNA, complete cds. | |||
GenBank | AJ417834 | 0.0 | AJ417834.1 Arabidopsis thaliana mRNA for transcription factor E2Fc (e2Fc gene). | |||
GenBank | AY045636 | 0.0 | AY045636.1 Arabidopsis thaliana At1g47870/T2E6_2 mRNA, complete cds. | |||
GenBank | AY058231 | 0.0 | AY058231.1 Arabidopsis thaliana At1g47870/T2E6_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479191.1 | 0.0 | PREDICTED: transcription factor E2FC isoform X2 | ||||
Swissprot | Q9FV70 | 0.0 | E2FC_ARATH; Transcription factor E2FC | ||||
TrEMBL | D7KBY0 | 0.0 | D7KBY0_ARALL; T2E6.2 | ||||
STRING | XP_010479190.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM808 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47870.2 | 0.0 | E2F/DP family protein |
Publications ? help Back to Top | |||
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