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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Csa17g051710.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
C3H |
| Protein Properties |
Length: 393aa MW: 41352.6 Da PI: 8.1293 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa17g051710.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 29.3 | 1.4e-09 | 97 | 120 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25
+kt+lC+ f++ GtC+y +C+FaH
Csa17g051710.1 97 FKTKLCCKFRA-GTCPYVTNCNFAH 120
69*********.************* PP
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| 2 | zf-CCCH | 42.5 | 1e-13 | 269 | 294 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
Csa17g051710.1 269 WKTRICNKWEITGYCPFGAKCHFAHG 294
8************************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 1.15E-7 | 94 | 127 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-13 | 94 | 129 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0039 | 96 | 122 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.671 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.3E-7 | 97 | 120 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.244 | 177 | 205 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.55E-7 | 177 | 204 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.47 | 177 | 204 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-8 | 178 | 204 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.55E-10 | 264 | 299 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.4E-17 | 264 | 298 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.178 | 268 | 296 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.2E-9 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.4E-11 | 269 | 294 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MSHHHRRDSG GDVVHVIPTN NPPPDNWFPN LGDSAVWATE DDYNRVWAVN PDNISGDNNG 60
PPNKKTRGSP SSSSATTTTA TTSAASNRTK AIGKMFFKTK LCCKFRAGTC PYVTNCNFAH 120
TVEELRRPPP NWQEIVAAHE EERSGGMGTP TVAVPELPRE EFQIPSLVSS TAESGRSFKG 180
RHCKKFYTEE GCPYGESCTF LHDEASRNRE SVAISLGPGG YGSGGGSGGG GGSASGAGGA 240
GNSNVVVLGG GAGGSGNGSG IHIVKPSNWK TRICNKWEIT GYCPFGAKCH FAHGAAELHR 300
FGGGLVEGEG KDGVSPNPDT KQTGQTPKGH SDTTTLLSPG VPHNVDASYH SGVALQRATS 360
AVTQKPGIRT HQKWKGPAKI SRIYGDWIDD IE*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK118013 | 0.0 | AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03. |
