PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g051710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 393aa    MW: 41352.6 Da    PI: 8.1293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g051710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-0997120125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +kt+lC+ f++ GtC+y  +C+FaH
  Csa17g051710.1  97 FKTKLCCKFRA-GTCPYVTNCNFAH 120
                     69*********.************* PP
2zf-CCCH42.51e-13269294126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  Csa17g051710.1 269 WKTRICNKWEITGYCPFGAKCHFAHG 294
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.15E-794127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-1394129IPR000571Zinc finger, CCCH-type
SMARTSM003560.003996122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67196123IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-797120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244177205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-7177204IPR000571Zinc finger, CCCH-type
SMARTSM003560.47177204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-8178204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-10264299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-17264298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178268296IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9268295IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11269294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSHHHRRDSG GDVVHVIPTN NPPPDNWFPN LGDSAVWATE DDYNRVWAVN PDNISGDNNG  60
PPNKKTRGSP SSSSATTTTA TTSAASNRTK AIGKMFFKTK LCCKFRAGTC PYVTNCNFAH  120
TVEELRRPPP NWQEIVAAHE EERSGGMGTP TVAVPELPRE EFQIPSLVSS TAESGRSFKG  180
RHCKKFYTEE GCPYGESCTF LHDEASRNRE SVAISLGPGG YGSGGGSGGG GGSASGAGGA  240
GNSNVVVLGG GAGGSGNGSG IHIVKPSNWK TRICNKWEIT GYCPFGAKCH FAHGAAELHR  300
FGGGLVEGEG KDGVSPNPDT KQTGQTPKGH SDTTTLLSPG VPHNVDASYH SGVALQRATS  360
AVTQKPGIRT HQKWKGPAKI SRIYGDWIDD IE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g051710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180130.0AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478659.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLD7KHJ60.0D7KHJ6_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010478659.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein