PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g048680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30902 Da    PI: 6.7899
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g048680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.8e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+k++rqvtf+kRr+ ++KKA+ELSvLCd+   +iifs ++klye++s
  Csa17g048680.1  9 KRIEDKIRRQVTFAKRRKSLIKKAHELSVLCDVPLGLIIFSYSNKLYEFCS 59
                    79***********************************************96 PP
2K-box32.24.6e-12901661288
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                      +++++ +  + + +eienL+ ++  + G +L+ L++ eL q e +Le+sl++ R++K  + +e ++++q++ ++l+
  Csa17g048680.1  90 DQSSNCAKTKDSMMREIENLKINLQLYDGHGLNLLTYDELLQFELHLESSLQHARARKGIMQCEFTQQQQQQTNKLK 166
                     566788889999**********************************************9888877777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.268161IPR002100Transcription factor, MADS-box
CDDcd002651.81E-36280No hitNo description
SuperFamilySSF554551.31E-26385IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-233859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-790170IPR002487Transcription factor, K-box
PROSITE profilePS512978.96792212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030308Biological Processnegative regulation of cell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048530Biological Processfruit morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRKGKTVIKR IEDKIRRQVT FAKRRKSLIK KAHELSVLCD VPLGLIIFSY SNKLYEFCSS  60
STSMENLIMR YQKEKEVGHT SADHSFHPAD QSSNCAKTKD SMMREIENLK INLQLYDGHG  120
LNLLTYDELL QFELHLESSL QHARARKGIM QCEFTQQQQQ QTNKLKGKGK ETFMDDETQH  180
FPDLVQGGSS WEHLMWQAER QMMMTCQRQD DDDDVTRLQQ QVKEEFLFDG EEEQQQQQPT  240
GALQLLQLPQ PSSSSQFTTN PKPSPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-15176174MEF2 CHIMERA
6byy_B4e-15176174MEF2 CHIMERA
6byy_C4e-15176174MEF2 CHIMERA
6byy_D4e-15176174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00172DAPTransfer from AT1G31140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g048680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306362.21e-137agamous-like MADS-box protein AGL63
SwissprotQ9SA072e-96AGL63_ARATH; Agamous-like MADS-box protein AGL63
TrEMBLA0A2H4FR431e-136A0A2H4FR43_9BRAS; MADS-box transcription factor AGL63
STRINGXP_010478557.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16860910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.28e-98GORDITA
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]