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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa17g043170.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
TCP |
| Protein Properties |
Length: 457aa MW: 51152.8 Da PI: 8.7759 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa17g043170.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 103.4 | 3.7e-32 | 47 | 132 | 2 | 79 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesss 79
g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a +i +l+ +++++s+c++++s+
Csa17g043170.1 47 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPIntnfdlenQNQTKSACSSGTSE 132
689***********************************************************996666665544444455222222 PP
|
| 2 | TCP | 113.2 | 3.5e-35 | 169 | 285 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96
g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a +i +l+ +++ +++++ ++ +
Csa17g043170.1 169 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPINTNFD--L-----ENQNQ--------TK--S 246
689************************************************************944444..2.....22222........22..3 PP
TCP 97 skksqksaasalnlak.esrakarararertrekmrikn 134
+s +s++s l+l++ e r kar+rarert+++ ++
Csa17g043170.1 247 ACSSGTSESSLLSLSRtEIRGKARERARERTAKDRDKDL 285
344556666679999999*************99987765 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 457 aa
Download sequence Send
to blast |
MELDEHVEVQ RQQQQSRKLQ RFTDDNTGMM KDWNNPSSRI IRVSRASGGK DRHSKVLTSK 60
GLRDRRIRLS VATAIQFYDL QDRLGFDQPS KAVEWLINAA SDSITDLPPI NTNFDLENQN 120
QTKSACSSGT SESSLLSLSX LQRFTDDNTG MMKDWNNPSS RIIRVSRASG GKDRHSKVLT 180
SKGLRDRRIR LSVATAIQFY DLQDRLGFDQ PSKAVEWLIN AASDSITDLP PINTNFDLEN 240
QNQTKSACSS GTSESSLLSL SRTEIRGKAR ERARERTAKD RDKDLQNAHQ SSFTQLLTGG 300
FDQQQQQQQP DNHRNWTGGS DCFNPVQFIP NSSSTSHQEP PTMNQNNHPF SFVPDQYNFG 360
ISSSSALNGG YSSRGTLQSN SQSLFLNNNI TQRASISSSS SSSSSPMDSQ SISFFMATPP 420
PLDHHSHQLP STFDGRLYLY YGEGNRNSDD KDKDRR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC073506 | 1e-154 | AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence. |
| GenBank | AY035008 | 1e-154 | AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds. |
| GenBank | AY057672 | 1e-154 | AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds. |
| GenBank | AY113898 | 1e-154 | AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds. |
| GenBank | CP002684 | 1e-154 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
