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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g042480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 235aa MW: 27682.1 Da PI: 10.069 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 1.9e-08 | 61 | 86 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++ C yG+ C+F+H+p Csa17g042480.1 61 GEKVCAFYQTHRLCGYGSECRFNHPP 86 7889********************97 PP | |||||||
2 | zf-CCCH | 23.1 | 1.3e-07 | 98 | 120 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+ff r G C+ G+ C F H++ Csa17g042480.1 98 PDCKFFKR-GACRKGSDCLFYHPK 120 89**9999.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.05 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-5 | 59 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.343 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-6 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 63 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.568 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-5 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-5 | 97 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 99 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
SEEGQIPGAE YSDAESYTRD NPKKRARTVD WRERESKMML DERSHEIYEH VLSSAYPIRP 60 GEKVCAFYQT HRLCGYGSEC RFNHPPLHEL SKMIGQKPDC KFFKRGACRK GSDCLFYHPK 120 EMDVGEQGRT LSLKPNDSER RYKTKSTYWQ ENRVRKQNQK KEDFGFGINE LGQFRDHQGS 180 NKDAQGIQLQ QRHKDVKMRK RSRSPVRRAN ESRERFGGRS PRRHELGYFK CERV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 27 | PKKRART |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g042480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019091066.1 | 1e-157 | PREDICTED: putative zinc finger CCCH domain-containing protein 10 | ||||
Swissprot | Q9C7P1 | 6e-56 | C3H10_ARATH; Putative zinc finger CCCH domain-containing protein 10 | ||||
TrEMBL | A0A1P8AM37 | 3e-64 | A0A1P8AM37_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
TrEMBL | A0A2H1ZED0 | 3e-64 | A0A2H1ZED0_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
STRING | XP_010480720.1 | 1e-146 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17915 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29600.1 | 3e-58 | C3H family protein |