PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g042460.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 345aa MW: 39997.1 Da PI: 9.0978

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g042460.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.7e-08	95	120	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f++++G C++ +rC F+H+p Csa17g042460.1 95 RKKDCQFYLENGLCRFRSRCWFNHPP 120 5689********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.73E-5	91	120	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-4	93	120	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.835	93	121	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAEARENPRE ARGRSDDTES RSVKETKVKK LNQELPLLIS AYDAIFSQGR ASDLRRDVKN 60 REQRRGASSE RLGSRSSSSD KTSERDLRAY PVRPRKKDCQ FYLENGLCRF RSRCWFNHPP 120 HLPKPRRAHR SYETESGSRP KKRAKTIPDS AEPDSRGRFE DIEEREIRQQ ENPQEQMQRN 180 TESQGAERAQ HNLQQQSKNE TEAQHNLQFH HQQQQQQQSV METPQSGMQH HTPQQQQPSV 240 KTPQRQELLA SHFNLYPSVG TLADAIEAGT RDQNSDALMT EVNNHFNKCQ QILNSISRSL 300 GSNTNEYVDD QKGKLEETEQ LLQQRKELIE QYKKSLEEIV KKEP*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAEARENPRE ARGRSDDTES RSVKETKVKK LNQELPLLIS AYDAIFSQGR ASDLRRDVKN  60
REQRRGASSE RLGSRSSSSD KTSERDLRAY PVRPRKKDCQ FYLENGLCRF RSRCWFNHPP  120
HLPKPRRAHR SYETESGSRP KKRAKTIPDS AEPDSRGRFE DIEEREIRQQ ENPQEQMQRN  180
TESQGAERAQ HNLQQQSKNE TEAQHNLQFH HQQQQQQQSV METPQSGMQH HTPQQQQPSV  240
KTPQRQELLA SHFNLYPSVG TLADAIEAGT RDQNSDALMT EVNNHFNKCQ QILNSISRSL  300
GSNTNEYVDD QKGKLEETEQ LLQQRKELIE QYKKSLEEIV KKEP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	PKKRAKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g042460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010501647.1	1e-115	PREDICTED: putative zinc finger CCCH domain-containing protein 9
STRING	XP_010501647.1	1e-115	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29570.1	4e-15	C3H family protein